Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G17
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   7.3  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   9.7  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   9.7  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 431  LVQISSI*IEYHLSILPTSSKSSVG 357
            L QI +I I+ H SI PT+S  S+G
Sbjct: 3658 LCQIYAIVIQKHSSISPTASFQSIG 3682


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +2

Query: 206 EGIQRIVCGVTETTTCQDVVFALAHATGKVGRFTLIERWRNNERLLAPQEFPLKILMKWG 385
           EG+   +  +   T   +VV+    A   + +FT +ER   +  +  P++  +K L+K  
Sbjct: 706 EGLYYYLGSIVNITEDPEVVYKYIQAACLMNQFTEVERICRDNNVYNPEK--VKNLLKEA 763

Query: 386 EYSNDIQFIL 415
           + ++ +  IL
Sbjct: 764 KLADQLPLIL 773


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 404 EYHLSILPTSSKSS 363
           +Y+LS+LPTS KSS
Sbjct: 223 QYYLSVLPTSYKSS 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,207
Number of Sequences: 5004
Number of extensions: 57740
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)