Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G17
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0237 + 1986627-1986693,1987095-1987348                           29   3.3  
07_01_1010 + 8561656-8561764,8563666-8563919,8564309-8564331,856...    29   3.3  
12_02_0361 - 17979979-17979982,17980093-17981045                       29   4.4  

>08_01_0237 + 1986627-1986693,1987095-1987348
          Length = 106

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 241 LGDPTDDSLYSLDPDLQLHIEIISNALKHL*LGY 140
           LG P D   YS+ PDLQ  + IIS  +    +GY
Sbjct: 27  LGPPIDSLTYSVYPDLQTSVNIISIKVIKSDVGY 60


>07_01_1010 +
           8561656-8561764,8563666-8563919,8564309-8564331,
           8564926-8564962,8565503-8565985
          Length = 301

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = +1

Query: 187 GAEGLGRGNTKNRLWGHRDNNLSGCSFRVSTRHW*SRQIHSHRTMAKQRETSGTPRI 357
           G  G GRG T +R     + N  G    V   H  + + H HR  A +    G PR+
Sbjct: 51  GGGGHGRGYTSHRSHNPNNPNDGGSGTPVVDPHNVATRGHHHRGAATRTAAGGDPRL 107


>12_02_0361 - 17979979-17979982,17980093-17981045
          Length = 318

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 548 HLFYLEKFCSPAYLD*KC 495
           HLF L+K CSPA LD  C
Sbjct: 39  HLFLLDKGCSPALLDAAC 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,657,522
Number of Sequences: 37544
Number of extensions: 347913
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)