Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G17
         (812 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical pr...    93   2e-19
Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical p...    32   0.42 
Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical pr...    32   0.42 
U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>U29379-1|AAF99982.2|  319|Caenorhabditis elegans Hypothetical
           protein K05B2.2a protein.
          Length = 319

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 39/79 (49%), Positives = 60/79 (75%)
 Frame = +2

Query: 185 MELKVWVEGIQRIVCGVTETTTCQDVVFALAHATGKVGRFTLIERWRNNERLLAPQEFPL 364
           MELK+ ++G++R V GVT+TTTC  +++ALAHAT + GRF ++E++RN ER LAP + PL
Sbjct: 1   MELKINIDGLERSVSGVTDTTTCSQIIYALAHATSQRGRFVMVEKYRNVERRLAPTDRPL 60

Query: 365 KILMKWGEYSNDIQFILRR 421
           + L KW E++ ++ F + R
Sbjct: 61  ETLRKWREHAANVTFQMLR 79


>Z81116-14|CAB03310.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 16  LIT*YNILVLFSFSIFGMFDVRYLSLYPQRRCW 114
           +++ Y I +L   SI  MF+ RY  L+  R CW
Sbjct: 98  MLSIYTIFMLVPVSIISMFENRYFVLFVNRGCW 130


>Z81100-6|CAB03195.2|  335|Caenorhabditis elegans Hypothetical
           protein K08G2.8 protein.
          Length = 335

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 16  LIT*YNILVLFSFSIFGMFDVRYLSLYPQRRCW 114
           +++ Y I +L   SI  MF+ RY  L+  R CW
Sbjct: 98  MLSIYTIFMLVPVSIISMFENRYFVLFVNRGCW 130


>U80837-5|AAB37901.1|  455|Caenorhabditis elegans Hypothetical
           protein F07E5.1 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -3

Query: 477 IDL-EFNCGGEGFELLPGSDLLNIN*ISFEYSPHFIKIFSGNSWGARSLSLFRH 319
           IDL EFN       L+ G +L  I    FE   +F K  + ++W  + +SL  H
Sbjct: 347 IDLKEFNMTEWMAALVRGQELHEITLGKFEKLTNFAKKINASAWNVKIVSLLEH 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,137
Number of Sequences: 27780
Number of extensions: 314640
Number of successful extensions: 743
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)