Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G14
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    28   1.5  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.8  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -2

Query: 226 ICHWLYGQWQYEPRHQ--GWREAWRHEL 149
           IC W+   W Y  RHQ   W  + RH L
Sbjct: 317 ICEWIANNWSYY-RHQPPAWHNSIRHNL 343


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 486 SNDSEATSHAHTH-RLRTGAEQHATES-RTFKLNR 584
           SND+   SH HT   L+   + H TE+ R F  +R
Sbjct: 78  SNDNRPVSHTHTFVELQKSHQNHLTENDRNFGTSR 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,397,123
Number of Sequences: 5004
Number of extensions: 67153
Number of successful extensions: 177
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)