Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G14
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 46 5e-05
12_01_0221 + 1671231-1671349,1671613-1671745,1672011-1672190,167... 44 2e-04
11_01_0220 + 1717861-1717979,1718149-1718281,1718544-1718723,171... 43 3e-04
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 33 0.29
12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927 32 0.50
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 30 2.0
07_01_0484 - 3643294-3643478,3644282-3644555,3644646-3645018,364... 30 2.7
12_01_0144 - 1097579-1097604,1097940-1098127,1098567-1098720,109... 29 3.6
11_01_0142 - 1169007-1169032,1169351-1169538,1169978-1170131,117... 29 3.6
04_03_0548 - 17035394-17035749,17035761-17036295,17036325-170364... 29 3.6
04_04_0563 + 26258320-26259099 29 4.7
10_08_0316 - 16688911-16689044,16689141-16689211,16689303-166893... 28 8.2
06_01_0332 - 2398683-2399316,2399933-2399983,2400455-2400528,240... 28 8.2
>01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +3
Query: 678 SQITEQLIAMGCYEVSLGDTIGVXTXGSVRRLLHEILXVAKPE 806
+ + ++L MGCYEVSLGDTIGV T G+V +L ++ E
Sbjct: 911 AHVAKELYDMGCYEVSLGDTIGVGTPGTVVPMLEAVMFFVPKE 953
Score = 29.5 bits (63), Expect = 3.6
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 809 LXLHFHDTYGQGLS 850
L +HFHDTYGQ LS
Sbjct: 955 LAVHFHDTYGQSLS 968
>12_01_0221 +
1671231-1671349,1671613-1671745,1672011-1672190,
1672632-1672712,1672850-1673013,1673109-1673245,
1673492-1673607,1673725-1673958
Length = 387
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/48 (43%), Positives = 31/48 (64%)
Frame = +3
Query: 645 TVHASRSSVWQSQITEQLIAMGCYEVSLGDTIGVXTXGSVRRLLHEIL 788
T+H S+ + + ++L MGC E+SLGDTIGV T GSV +L ++
Sbjct: 239 TIHPSKVAY----VAKELYDMGCSEISLGDTIGVGTPGSVLAMLEAVM 282
>11_01_0220 +
1717861-1717979,1718149-1718281,1718544-1718723,
1719046-1719126,1719259-1719422,1719518-1719654,
1719900-1720015,1720134-1720367
Length = 387
Score = 43.2 bits (97), Expect = 3e-04
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +3
Query: 645 TVHASRSSVWQSQITEQLIAMGCYEVSLGDTIGVXTXGSVRRLLHEIL 788
T+H S+ + + ++L MGC E+SLGDTIGV T GS+ +L ++
Sbjct: 239 TIHPSKVAY----VAKELYDMGCSEISLGDTIGVGTPGSILAMLEAVM 282
Score = 28.3 bits (60), Expect = 8.2
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 809 LXLHFHDTYGQGLS 850
L +HFHDTYGQ L+
Sbjct: 290 LAVHFHDTYGQALA 303
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 441 NLTFYNANRSPRSDPSNDSEATSHAHTHRLRTGAEQHATESRTFKLNRNRR 593
+L ++ N SPR P D SH + T +HAT R NR R
Sbjct: 556 SLQGFDLNLSPRETPDEDKREESHVSADAVSTPTGRHATLDRRRAFNRRIR 606
>12_02_0701 + 22271550-22271652,22272310-22272791,22272823-22272927
Length = 229
Score = 32.3 bits (70), Expect = 0.50
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 405 GGRYVPSSRQILNLTFYNANRSPRSDPSNDSEATSHAHTHRLRTGAEQHATESRTFKLNR 584
GG V + R+ + + SP +DP+ D+ + + R GAE AT R
Sbjct: 33 GGEKVSNDREKYSSWIRSRLSSPPTDPAADAATAAGSTARERREGAEGAATAGSARNCRR 92
Query: 585 NR-RPRVKL 608
R PR++L
Sbjct: 93 RRHHPRIRL 101
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 627 RPSDSRTVHASRSSVWQSQITEQLIAMGCYEVSLGDTIGVXT 752
RP VH R WQ ++T L AM C+ VS G GV T
Sbjct: 9 RPDKFTGVHFKR---WQIRVTLWLTAMKCFWVSTGKPEGVLT 47
>07_01_0484 -
3643294-3643478,3644282-3644555,3644646-3645018,
3645177-3645233,3646034-3646458
Length = 437
Score = 29.9 bits (64), Expect = 2.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 505 HRMHTHIDYEREPSNTQPNLEHLNLTEIDD 594
H++H+H D E HLNLTE+ D
Sbjct: 124 HKVHSHFDRSLESGPYTLKFVHLNLTEVTD 153
>12_01_0144 -
1097579-1097604,1097940-1098127,1098567-1098720,
1098825-1099092,1099310-1099550,1099669-1099833,
1099898-1100298
Length = 480
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 453 YNANRSPRSDPSNDSEATSHAHTHRLRTGAEQHATESRTF 572
YN SP S P+ S + AHT + + + H S F
Sbjct: 414 YNLPHSPFSSPTKASNVAATAHTSNISSSSSPHKVASSLF 453
>11_01_0142 -
1169007-1169032,1169351-1169538,1169978-1170131,
1170565-1170656,1170782-1170961,1171080-1171244,
1171309-1171709
Length = 401
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 453 YNANRSPRSDPSNDSEATSHAHTHRLRTGAEQHATESRTF 572
YN SP S P+ S + AHT + + + H S F
Sbjct: 335 YNLPHSPFSSPTKASNVAATAHTSNISSSSSPHKVASSLF 374
>04_03_0548 -
17035394-17035749,17035761-17036295,17036325-17036458,
17037053-17037134
Length = 368
Score = 29.5 bits (63), Expect = 3.6
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 186 AIRAGVKLGDTS*RPVQRHCTF 121
A AGV LG T+ RPV+R CT+
Sbjct: 26 AASAGVTLGTTARRPVKRRCTW 47
>04_04_0563 + 26258320-26259099
Length = 259
Score = 29.1 bits (62), Expect = 4.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 574 LNVLDSVACCSAPVRNRCVC-ACDVASLSFDGSERGDRLAL*NVRFKICREDG 419
L + D++ +PV C+ A +ASL RG+R AL N R I + G
Sbjct: 108 LAIYDTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSG 160
>10_08_0316 -
16688911-16689044,16689141-16689211,16689303-16689354,
16689589-16689685,16689764-16689841,16689938-16690054,
16690172-16690276,16691026-16691100,16691297-16691356,
16691454-16691549,16691838-16691954,16692142-16692260,
16692349-16692490,16694204-16694290,16694852-16694914,
16695081-16695161
Length = 497
Score = 28.3 bits (60), Expect = 8.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -1
Query: 731 TKRYFITAHRNQLFCYLGLPHGA 663
T++YF+TA ++ +C+ +P G+
Sbjct: 289 TQKYFVTASKDNTWCFYDIPSGS 311
>06_01_0332 -
2398683-2399316,2399933-2399983,2400455-2400528,
2400685-2400782,2400874-2400956,2401323-2401582
Length = 399
Score = 28.3 bits (60), Expect = 8.2
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Frame = +3
Query: 483 PSNDSEA-TSHAHTHRLRTGAEQHATESRTFKLNRNRRPRVKLNYNTLTRPSDSRTVHAS 659
PS+ S A T H H + GA++ ++++ ++ V + L PS S T S
Sbjct: 252 PSSSSAAGTPHHHGGGMVVGADRVLAPAQSYPISAAADDDVAGCWRPLPSPSSSTTTALS 311
Query: 660 ---RSSVWQSQITEQLIAMG 710
RSS++Q + Q + G
Sbjct: 312 LLLRSSMFQELVARQPVVEG 331
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,618,916
Number of Sequences: 37544
Number of extensions: 457646
Number of successful extensions: 1268
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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