Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G11
         (512 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56...    27   8.8  

>01_01_0074 -
           561304-562131,562219-562425,563034-563084,563310-563408,
           564476-564622,564750-564851,565713-565928,566061-566192,
           566249-566310,567618-567746,568426-568567,568735-568830,
           568924-569000,569070-569148,569229-569297,569589-569703,
           570614-570777,570847-571002
          Length = 956

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 309 KLFNYRIFLFKTKKNISWGEKLFG 238
           +LF Y +  F T   ++W EK +G
Sbjct: 378 QLFQYALHFFSTNIEMTWSEKCYG 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,011,772
Number of Sequences: 37544
Number of extensions: 92144
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)