Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G10
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    24   1.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   5.9  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.8  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.8  

>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 283 KVLHKQSIDVCVHPLRVSCRSNGLYY 206
           KVL   +  +C+ P+ ++ R NGL Y
Sbjct: 24  KVLVTFAHFICLFPITINIRKNGLNY 49


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 600 ECQTNYEWTLE 632
           EC  NY W LE
Sbjct: 515 ECPNNYPWILE 525


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 FTRPPESGPKXXVRLISISTLDDSLN 96
           FT PP+SG K  + +  + +L   LN
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 FTRPPESGPKXXVRLISISTLDDSLN 96
           FT PP+SG K  + +  + +L   LN
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 FTRPPESGPKXXVRLISISTLDDSLN 96
           FT PP+SG K  + +  + +L   LN
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 FTRPPESGPKXXVRLISISTLDDSLN 96
           FT PP+SG K  + +  + +L   LN
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLN 258


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 173 FTRPPESGPKXXVRLISISTLDDSLN 96
           FT PP+SG K  + +  + +L   LN
Sbjct: 233 FTLPPDSGEKLTLGVTILLSLTVFLN 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,012
Number of Sequences: 336
Number of extensions: 3801
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)