Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G10
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch... 126 2e-30
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 63 3e-11
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 28 1.2
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos... 28 1.6
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 28 1.6
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 27 2.8
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 27 3.7
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 27 3.7
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 27 3.7
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 4.8
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 26 6.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.5
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 25 8.5
>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 126 bits (305), Expect = 2e-30
Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Frame = +1
Query: 166 RVKGLTIVKPIVYGNIARYFGKKREEDG---HTHQWTVYVKPYANEDMSTYIKKVHFKLH 336
RV I +PI+ GN A+ K+ +E HTH W ++V+ ED+S +++KV FKLH
Sbjct: 6 RVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKVVFKLH 65
Query: 337 ESYANPNRIVTKPPYELMETGWGEFEIVIKLYF-HDPNERPLTLYHILKLFQSPVTEGTP 513
++Y NP R + PP+E++ETGWGEF+I+++++F + +E+ LT YH LKL
Sbjct: 66 DTYNNPTRTIESPPFEVIETGWGEFDIMVRIFFAPEAHEKALTFYHHLKLHPYGPRMEEM 125
Query: 514 PTFGHALVSESYEEIVFQEPTQLMQHLLKNVRPITNGH 627
G + S YEEIVF EP + LL PI +GH
Sbjct: 126 KASGGLVESVQYEEIVFNEPFEYTYKLLSQ-NPIGDGH 162
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 63.3 bits (147), Expect = 3e-11
Identities = 24/69 (34%), Positives = 43/69 (62%)
Frame = +1
Query: 268 VYVKPYANEDMSTYIKKVHFKLHESYANPNRIVTKPPYELMETGWGEFEIVIKLYFHDPN 447
V + P E ++++ +V +KLH ++ NP R + KPP+++ E GWGEFE+ I +Y+ D
Sbjct: 40 VCLNPQGEETDASFVDRVTYKLHPTFQNPTRTIRKPPFQIKEQGWGEFEMEIIIYYADKG 99
Query: 448 ERPLTLYHI 474
L+++
Sbjct: 100 GEHRFLHYL 108
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 166 RVKGLTIVKPIVYGNIARYFGKKREEDGHTHQWTVYVKPYANEDMST 306
RV+GLT V P+V N R + ++ G+ + W ++ Y ++T
Sbjct: 52 RVQGLTNVVPVVDDNYKRPYAVWKDR-GYAYSWGQQIRNYLGRVVNT 97
>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +1
Query: 223 FGKKREEDGHTHQWTVYVKPYANEDMSTYIKKVHFKLHESYANPNRIVTKPPYELMETGW 402
+ + + H+ + Y K +A + Y+KK+ L ANP+ E+++ +
Sbjct: 63 YSNSKNAERHSGEIQAYAK-FAGSTWTYYVKKIRIILGREPANPSPKGKNEDLEVIDMNF 121
Query: 403 GEFEIV 420
G ++V
Sbjct: 122 GPSKVV 127
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 426 LYNDLELSPTSLHEFVRGLGHD 361
+YNDL LSPT H FV + D
Sbjct: 155 VYNDLPLSPTVKHSFVSPVSGD 176
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/80 (27%), Positives = 33/80 (41%)
Frame = +1
Query: 151 PDSGGRVKGLTIVKPIVYGNIARYFGKKREEDGHTHQWTVYVKPYANEDMSTYIKKVHFK 330
P G V L I P + +AR + EDG + T+ DM +KK+ K
Sbjct: 220 PPLSGNVDPLPINSPPLTNPVARDIDQTEPEDGPLFRATILNYERTTHDMRMVLKKL-IK 278
Query: 331 LHESYANPNRIVTKPPYELM 390
E A+ + ++ ELM
Sbjct: 279 RIEHVAHSHGLLYMSYKELM 298
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 27.1 bits (57), Expect = 2.8
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +1
Query: 250 HTHQWTVYVKPYANEDMSTYIKKVHFKLHESYANPNRIVTKPPYELMETGWGEFEIVIKL 429
HT +K ++ K+++ + + NP VT PY + GE
Sbjct: 197 HTSDLRKLLKHKVTGSNASIFKRINPRSRKRVVNPECSVTDTPYGKLNNVIGEGASSFIR 256
Query: 430 YFHDPNERPLTLYHILKLFQSPV 498
+D N+ P+ ++ K+F+ P+
Sbjct: 257 VINDRNKLPI---YVAKVFRPPL 276
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Frame = +1
Query: 268 VYVKPYANEDMSTYIKKVHFKLHESYANPNRIVTKPPYELMETG--WGEFEIVI 423
VY+ Y N D + I H K H +PN V + P + W E ++
Sbjct: 597 VYIMIYRNIDATIPIDSFHTKEHLQSLHPNIYVIRSPSHFRQNALFWAHHEKLV 650
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 4 LHCLHSFADSKVKFHSVRSIALSFTNSQ*KPFK 102
+H +H KFHS ++ S+TNS K FK
Sbjct: 47 IHFVHCHFGGIKKFHSHCQLSSSYTNSGQKSFK 79
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.7
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Frame = -2
Query: 378 RGLGHDPIGVRVAFVKFEVNFFDVSRHILVCVRFYIN---------SPLMC-VSILFAFL 229
R + PI VAF F ++ S HI C ++++ SP MC +SI F L
Sbjct: 687 RNIAIPPILRLVAFGLFITSYIIPSHHIRSCKHYFLDRLAILFLTFSPTMCMLSISFEAL 746
Query: 228 AEVTGYITVNYRLYYC*TLHT-AARIWPEXXRKAHINIH 115
V +IT+ + L ++ PE RK H
Sbjct: 747 FYVVLFITLGLWMELETELQKYTEQLHPEYSRKKDAKFH 785
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +1
Query: 283 YANEDMSTYIKKVHFKLHESYA-----NPNRIVTKP-PYELMETGWGEFEIVIKLYFHDP 444
+ NE I+ F L+ES N ++ T P ++ WG+F+ ++ YF D
Sbjct: 239 WINETTGENIEMEDFVLYESLGLKDLVNQGKLETISFPGRHLQMRWGDFDALVLKYFKDE 298
Query: 445 NERPLTL 465
E L
Sbjct: 299 KEEKTEL 305
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 210 YSPLLRQETRRGWTHT 257
YSP+L Q GW HT
Sbjct: 272 YSPILLQGNESGWAHT 287
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 514 PTFGHALVSESYEEIVFQEPTQ--LMQHLLKNVRPITNGHWKHDTDFEE 654
P+F L S+ +E++FQE Q L H +N N H+ + EE
Sbjct: 2305 PSFLEVLPSDLRDELLFQEAVQMRLFDHATRN-----NNSVDHEVEMEE 2348
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = +1
Query: 304 TYIKKVHFKLHESYA-NP---NRIVTKPPYELMETG 399
+Y++K FKL +A NP N+I+TK Y + E+G
Sbjct: 199 SYMEKPGFKLEFEFAENPFFTNKILTKTYYYMEESG 234
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,988,680
Number of Sequences: 5004
Number of extensions: 65954
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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