Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G09
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    31   0.15 
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51...    28   1.8  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   9.6  

>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +3

Query: 144 LKDKIKIFSVAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFI---KCY 314
           +KD +  F+V Y+  G + V   ++C   LPQI  KNPD Q     N   S F+   K  
Sbjct: 51  VKDPVDFFAV-YDGHGGDKVA--KWCGSNLPQILEKNPDFQKGDFVNALKSSFLNADKAI 107

Query: 315 LDD 323
           LDD
Sbjct: 108 LDD 110


>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
           L51|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 145

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +3

Query: 189 GQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKED 368
           G ++ G KEF    L  +  ++ DV+          P I+ Y + GR+ +I     S   
Sbjct: 34  GGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKVICTRKMSASS 93

Query: 369 ILE 377
           I +
Sbjct: 94  IFQ 96


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 279 KNLTPSPFIKCYLDDGRKILIDVDNKSKE 365
           KN   +P I+C L+  ++ L+   N+SKE
Sbjct: 102 KNNDDAPTIRCALNCTQEFLLSFSNESKE 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,289,321
Number of Sequences: 5004
Number of extensions: 67702
Number of successful extensions: 163
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)