Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G09
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723           31   1.4  
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373...    29   5.8  
11_01_0050 - 384860-384874,384942-385325,385426-385914,386057-38...    28   7.6  
07_03_1515 - 27348999-27349559,27349738-27350070,27350461-273505...    28   7.6  
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503...    28   7.6  
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468...    28   7.6  

>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
          Length = 119

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 20/68 (29%), Positives = 34/68 (50%)
 Frame = +3

Query: 171 VAYNITGQNNVGTKEFCFWYLPQIQYKNPDVQIVTLKNLTPSPFIKCYLDDGRKILIDVD 350
           V Y   G ++ G + F   +LP  + KNP +++VT       P +K    +  + ++ V 
Sbjct: 14  VNYCDWGGSSRGIRAFMEAHLPAFKEKNPHLEVVTELVRGQHPNLKGIYKNHNERVVCVR 73

Query: 351 NKSKEDIL 374
           N + EDIL
Sbjct: 74  NLAPEDIL 81


>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
            24737484-24737549,24737629-24737799,24737901-24737999,
            24738075-24738186,24738282-24738343,24738412-24738483,
            24738583-24738681,24738764-24738997,24739104-24739178,
            24739299-24739386,24739478-24739638,24739734-24739841,
            24739934-24741922,24742007-24742279,24742957-24743295,
            24743449-24745038,24745166-24745241,24745333-24745412,
            24745614-24745679,24745761-24745830,24745899-24746134,
            24746149-24746319,24746915-24747097,24747176-24747241,
            24747326-24747389,24747472-24747530,24747612-24747699,
            24747799-24747891,24747956-24748116,24748215-24748307,
            24748405-24748518,24748654-24748773,24748852-24748935,
            24749016-24749171,24749518-24750154,24752874-24752929
          Length = 2815

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 294  SPFIKCYLDDGRKILIDVDN--KSKEDILEHL 383
            S  I   LDD  KI+ID DN  ++K++++E+L
Sbjct: 1914 SAVIFSLLDDSNKIMIDFDNLKQNKDELMENL 1945


>11_01_0050 -
           384860-384874,384942-385325,385426-385914,386057-386233
          Length = 354

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 352 LSTSIKIFLPSSR*HFMKGEGVKFFKVTICTSGFL 248
           LST +++ LP  R    K    +F++V  C SGF+
Sbjct: 62  LSTYVRVVLPKLRPAIQKDSVKQFYQVYNCWSGFM 96


>07_03_1515 -
           27348999-27349559,27349738-27350070,27350461-27350574,
           27350911-27351141,27351231-27351686
          Length = 564

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 222 FWYLPQIQYKNPDVQIVTLKNLTPSPFIK-CYLDDGRKILIDVDNKSKEDILEHLLHTVG 398
           F YL    +KN D   V +  L  +PF   C L   R +L+D  +   E+ +   LHT+G
Sbjct: 34  FDYLNDKIWKN-DTICVNMLRLKRAPFFCFCKLFRDRCLLVDATHMPVEEQVAMFLHTIG 92


>03_06_0285 +
           32848085-32848988,32849057-32849245,32850136-32850311,
           32850569-32851141
          Length = 613

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 291 PSPFIKCYLDDGRKILIDVDNKS 359
           P+P +K YL+D +KI  + DN S
Sbjct: 394 PAPLLKAYLEDSKKIPSNSDNLS 416


>01_06_1783 +
           39845998-39846174,39846260-39846534,39846758-39846891,
           39846992-39847116,39847312-39847494,39847610-39847644,
           39847756-39847912,39847936-39848049,39848143-39848235,
           39848316-39848455,39848606-39848676,39848759-39848839,
           39851475-39851954,39852110-39852387,39853346-39854143
          Length = 1046

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/39 (46%), Positives = 20/39 (51%)
 Frame = -2

Query: 243 VFAVDTKSRTLLFLHYFGLLCCRLLKIS*FCLSGLASRH 127
           VF V T S  LLFL +F       L +  FCLSGL   H
Sbjct: 264 VFIV-TASLVLLFLFFFKSTWSAWLLVVLFCLSGLQGLH 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,746,739
Number of Sequences: 37544
Number of extensions: 384088
Number of successful extensions: 773
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)