Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G09
         (808 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003590-1|AAH03590.1|  173|Homo sapiens mitochondrial ribosomal...   176   7e-44
AK024702-1|BAB14968.1|  173|Homo sapiens protein ( Homo sapiens ...   176   7e-44
AK024433-1|BAB15723.1|  192|Homo sapiens FLJ00023 protein protein.    176   7e-44
AB061208-1|BAB54958.1|   33|Homo sapiens mitochondrial ribosomal...    34   0.53 

>BC003590-1|AAH03590.1|  173|Homo sapiens mitochondrial ribosomal
           protein S25 protein.
          Length = 173

 Score =  176 bits (429), Expect = 7e-44
 Identities = 83/165 (50%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
 Frame = +3

Query: 75  MPFMKGXAPIXRTLNYLNAGKLVLKDKIKIFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 254
           MP MKG  PI RTL YL+ G +V KD +K+ +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 1   MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59

Query: 255 PDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXX 434
           P VQI+  KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+          
Sbjct: 60  PWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEE 119

Query: 435 XXXXDNPANFGVG--CDRSCMCEVFGQVPCSGVVPLPKFMRGKYK 563
                +PANFG    C R C+CEV GQVPC  +VPLPK MRGKYK
Sbjct: 120 KKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGKYK 164


>AK024702-1|BAB14968.1|  173|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21049 fis, clone CAS00384. ).
          Length = 173

 Score =  176 bits (429), Expect = 7e-44
 Identities = 83/165 (50%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
 Frame = +3

Query: 75  MPFMKGXAPIXRTLNYLNAGKLVLKDKIKIFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 254
           MP MKG  PI RTL YL+ G +V KD +K+ +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 1   MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 59

Query: 255 PDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXX 434
           P VQI+  KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+          
Sbjct: 60  PWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEE 119

Query: 435 XXXXDNPANFGVG--CDRSCMCEVFGQVPCSGVVPLPKFMRGKYK 563
                +PANFG    C R C+CEV GQVPC  +VPLPK MRGKYK
Sbjct: 120 KKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGKYK 164


>AK024433-1|BAB15723.1|  192|Homo sapiens FLJ00023 protein protein.
          Length = 192

 Score =  176 bits (429), Expect = 7e-44
 Identities = 83/165 (50%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
 Frame = +3

Query: 75  MPFMKGXAPIXRTLNYLNAGKLVLKDKIKIFSVAYNITGQNNVGTKEFCFWYLPQIQYKN 254
           MP MKG  PI RTL YL+ G +V KD +K+ +V YN  G+   G ++F F+ +PQIQYKN
Sbjct: 20  MP-MKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKN 78

Query: 255 PDVQIVTLKNLTPSPFIKCYLDDGRKILIDVDNKSKEDILEHLLHTVGKSXXXXXXXXXX 434
           P VQI+  KN+TPSPF++ YLD G ++L+DV+ KS ++I+EH+   +GK+          
Sbjct: 79  PWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEE 138

Query: 435 XXXXDNPANFGVG--CDRSCMCEVFGQVPCSGVVPLPKFMRGKYK 563
                +PANFG    C R C+CEV GQVPC  +VPLPK MRGKYK
Sbjct: 139 KKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGKYK 183


>AB061208-1|BAB54958.1|   33|Homo sapiens mitochondrial ribosomal
           protein S25 protein.
          Length = 33

 Score = 34.3 bits (75), Expect = 0.53
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 111 TLNYLNAGKLVLKDKIKIFSVAYNITGQNNVG 206
           TL YL+ G +V KD +K+ +V YN  G+   G
Sbjct: 1   TLQYLSQGNVVFKDSVKVMTVNYNTHGELGEG 32


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,342,521
Number of Sequences: 237096
Number of extensions: 2215874
Number of successful extensions: 3893
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3888
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)