Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G08
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 29 0.74
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 3.0
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 27 3.0
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 27 3.9
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 3.9
SPBC800.07c |tsf1||mitochondrial translation elongation factor E... 26 5.2
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar... 26 5.2
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 9.1
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 9.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.1
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.74
Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
Frame = +3
Query: 114 EIEQKTNTMDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLS 293
E E+ ++DP+S L N K K+ +A+ LC+ A+A + +S
Sbjct: 110 EPERFVFSIDPKSPLIAVNWPFKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHIS 169
Query: 294 CWLSTM-LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVGYKVAKFL 470
+S + + +F G + ++ P+ P ++IG + + +F VG + +
Sbjct: 170 LTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIG-MLGFGIFNISVAVGKDIQTIM 228
Query: 471 ------------PVKVVAAAMKEIYRAK 518
P+ VVAAA+ ++Y K
Sbjct: 229 MCRFFAGFFASAPLTVVAAALADMYSNK 256
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 277 LEKAWAPDPKSSLTARAHSNECAMSK 200
L + WAPDP+++L +S E M+K
Sbjct: 365 LLERWAPDPRNTLLLTGYSVEGTMAK 390
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 3.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -2
Query: 693 CRSWVAWFPSQSGS 652
C+SW+ W+PS+ S
Sbjct: 459 CQSWLVWYPSEDAS 472
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +3
Query: 321 FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVG 449
F G++ G + P+L L PQ V+ + W + F F G
Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIFGNG 421
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -1
Query: 319 ITSIVDSQHDSGCFLEKAWAPDPKSSLTARAHSNECAMSKYGYIFNFMT 173
+ SIV D L WA + L + S E + KY + N++T
Sbjct: 142 LKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLT 190
>SPBC800.07c |tsf1||mitochondrial translation elongation factor
EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 406 VPMTNWGVFFNGAKMGSPRRPLATI 332
VP T G+F +GAK SP + L I
Sbjct: 207 VPSTAIGIFSHGAKQSSPLQQLGRI 231
>SPAC23H4.09 |cdb4||curved DNA-binding protein
Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 492 AMKEIYRAKKVYDGVSHAAKLYPN 563
A+K++YR K Y G++ + PN
Sbjct: 63 AIKKVYRTKDAYKGIAFPTAVSPN 86
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 320 IRRRYGSQWSSRRTHFGAVEEYTPISHRN 406
+RRRY Q S+ EEY PI H N
Sbjct: 945 LRRRYSKQ-HSKHLESVVYEEYHPILHSN 972
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = -1
Query: 418 YHVTVPMTNWGVFFNGAKMGSPRRPLATIPPANITSIVDSQHDSGCFLEKAWAPDPKSSL 239
YH M + + NG++M + P PPAN T++ S S F + + ++
Sbjct: 186 YHNAYDMAS--MMKNGSRMNNSFPPTTPYPPANDTTVNSSLPHS--FASPSSTFEQPHTV 241
Query: 238 TARAHSNECAMSKYGY 191
+RA S + S + +
Sbjct: 242 QSRAPSVDTTSSSHSF 257
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.4 bits (53), Expect = 9.1
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Frame = +3
Query: 210 AHSLLCALAVREDLGSGAQA---------FSRKHPLSCWLSTMLVIFAGGMVANGLL--G 356
AHS +CA + E +G +A S K P SC+ +T + + G L G
Sbjct: 983 AHSNVCAARIYEHMGQAREAEFFYRQACSISEKMPFSCFSATFQLRLCSLLTRAGKLEKG 1042
Query: 357 EPILAPL 377
E IL L
Sbjct: 1043 EKILFDL 1049
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 752 DQICLXIQYEDHGXYQRSLCVEAGLHG 672
D+ C+ +QY DH ++ LCV L G
Sbjct: 757 DEYCM-VQYTDHFYFRDHLCVATELLG 782
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,417,329
Number of Sequences: 5004
Number of extensions: 74067
Number of successful extensions: 186
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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