Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G08
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1786 - 29507906-29508898                                         28   7.2  
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    28   7.2  
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856...    28   7.2  
07_01_0003 + 16711-17016,17107-17177,17269-17461,17929-17984,185...    28   9.5  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    28   9.5  

>07_03_1786 - 29507906-29508898
          Length = 330

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +2

Query: 167 QSGHKVENVSIFRHSAFVAVRSCSQRRFG--IRCPGLFQEASTVMLAVHYASDIRRRYGS 340
           QS H+   +  F++    A+++  +R     + C  +   A+   +A+     +  R G 
Sbjct: 93  QSSHRSFGMRNFKY--ITAIKAAVERECPATVSCADILALAARDGVAMLGGPSVAMRTGR 150

Query: 341 QWSSRRTHFGAVEEYTPISHRNCYMVLSFLHAFRCRLQGS 460
           +  SR +++G VE+Y P  + +   VLS   A     +G+
Sbjct: 151 R-DSRESYYGVVEQYIPNHNDSVSTVLSRFAAIGVDTEGA 189


>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 427 KTKY--HVTVPMTNWG-VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSG 284
           +TKY  ++ +   N G +FF   K G  R  LA I  A I S V   HD+G
Sbjct: 188 QTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNG 238


>05_07_0043 -
           27284814-27285190,27285287-27285488,27285576-27285650,
           27285743-27285816,27285909-27285996,27286081-27286203,
           27288374-27288580,27288631-27288636
          Length = 383

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 367 KMGSPRRPLATIPPANITSIVDSQHDSGCFLE----KAWAPDPKSSLTARAH 224
           +M +PR+P + I P NI+S       +G   E    K +AP P + +T   H
Sbjct: 284 EMETPRKPFSQITPGNISSAPVRPISTGGTEENRTPKTFAPVPTTPMTVSPH 335


>07_01_0003 +
           16711-17016,17107-17177,17269-17461,17929-17984,
           18511-18588,18873-18929,19396-19903
          Length = 422

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 744 LSXYPIRRSRKXPAKPLC 691
           L+ YP+R  R+ P KPLC
Sbjct: 27  LNPYPLRLHRRHPQKPLC 44


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 408 VTWYLVFYTPFDVGYKVAKFLPVKVVAAAMKEIYRAKKV 524
           +TW L+FYTP   G  V + + V+ VA ++    RA KV
Sbjct: 222 ITWLLLFYTPNTKGQFVLESV-VEDVARSLDGALRAGKV 259


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,345,166
Number of Sequences: 37544
Number of extensions: 540155
Number of successful extensions: 1335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)