Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G04
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.9  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   3.8  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.1  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.1  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.9  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 LNDVWVDFIHFVSTFVFAGFYKPDCKGII 316
           +  +WV  I+  +T++   F K  CK +I
Sbjct: 129 MTGIWVWLINISATYICYAFGKFSCKVMI 157


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 LNDVWVDFIHFVSTFVFAGFYKPDCKGII 316
           +  +WV  I+  +T++   F K  CK +I
Sbjct: 362 MTGIWVWLINISATYICYAFGKFSCKVMI 390


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 402 LNDVWVDFIHFVSTFVFAGFYKPDCKGII 316
           +  +WV  I+  +T++   F K  CK +I
Sbjct: 362 MTGIWVWLINISATYICYAFGKFSCKVMI 390


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 340 IEACKDKCGNKVNEIYPYIIQEIKPTLTELGID 438
           ++  K+K  + +  +Y  ++++ KP L  +G D
Sbjct: 333 LDPTKEKLYDAIEALYGDMLKQFKPPLFHMGGD 365


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 186 FISVIEFFITFHWTSV*SPYRYG 118
           F++V    I F W S  S +RYG
Sbjct: 575 FLNVSSIPIYFKWLSFLSWFRYG 597


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 186 FISVIEFFITFHWTSV*SPYRYG 118
           F++V    I F W S  S +RYG
Sbjct: 575 FLNVSSIPIYFKWLSFLSWFRYG 597


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 412 PTLTELGIDTPEEL 453
           PTL ELG DT   L
Sbjct: 207 PTLEELGFDTEGRL 220


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,500
Number of Sequences: 336
Number of extensions: 3266
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)