Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G03
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0497 + 18777377-18777592,18777691-18778512                       29   4.1  
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120...    28   7.2  
01_05_0720 - 24588623-24588658,24588888-24589196,24589449-245913...    28   7.2  

>07_03_0497 + 18777377-18777592,18777691-18778512
          Length = 345

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 566 PYNRTYCVGGFNSWLDTTRTDXA 634
           P N T CVG  + WL   RTD A
Sbjct: 5   PENSTVCVGSTDGWLALHRTDAA 27


>07_03_1606 +
           28111158-28111328,28111431-28111549,28111984-28112024,
           28112654-28112713,28112812-28112858,28112939-28113133,
           28113236-28113282,28113363-28113429,28113521-28113621,
           28113725-28113826,28113904-28114042,28114120-28114182,
           28114323-28114406,28114981-28115295
          Length = 516

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 518 FLFSEYILRV*FLPSVPYNRTYCVGGFNSW 607
           F+FSE +  +  LP + +N  +C+  F SW
Sbjct: 77  FVFSEDLFFIYLLPPIIFNAGFCLLEFYSW 106


>01_05_0720 -
           24588623-24588658,24588888-24589196,24589449-24591366,
           24591412-24591693,24592027-24592328
          Length = 948

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 403 SEPKIFSRFWKSRNLVSSL*PFTRLSANSNRLNANTATA 287
           S+P+  +  W++ NLVS +  F   S+N  + N    TA
Sbjct: 614 SDPENCAEIWRATNLVSKVIGFIACSSNEAQRNRRPITA 652


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,798
Number of Sequences: 37544
Number of extensions: 248830
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)