Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G02
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1227 - 31882500-31882778,31883039-31883329,31883555-318838...    38   0.009
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    29   3.2  
10_08_0340 - 16934317-16934478,16934569-16934745,16934842-169349...    29   5.7  
05_05_0272 - 23738514-23738817,23739382-23740748                       29   5.7  
09_04_0524 + 18321110-18323978,18324098-18324576                       28   9.9  

>04_04_1227 -
           31882500-31882778,31883039-31883329,31883555-31883800,
           31884212-31884353,31884583-31884653
          Length = 342

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = +3

Query: 420 VRFP-LSVAGSASYTVLATDYTTYAAVFTCQKLAFAHRRSATILSRTKELDKMFVDKMRL 596
           +RFP L       Y VLATDY  YA V   +  +F       I SRT      F++K + 
Sbjct: 214 LRFPTLPFIPKEPYDVLATDYDNYAVVSGAKDTSFIQ-----IYSRTPNPGPEFIEKYKS 268

Query: 597 KLSSYGVDPYDLSIISQNDC 656
             +++G DP  +    Q DC
Sbjct: 269 YAANFGYDPSKIKDTPQ-DC 287


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 404 SCKDEGSIPSERCRLSKLHSFGNGLHNIRRGLHLSEVSV 520
           SC++  S+  E CRL    S   G  N+++ LHL++VS+
Sbjct: 142 SCRELTSLDLEGCRLPPAPSGFEGFQNLKK-LHLTKVSL 179


>10_08_0340 -
           16934317-16934478,16934569-16934745,16934842-16934940,
           16935025-16935225,16935389-16935409,16935554-16935661,
           16935749-16936130,16936693-16936912,16938673-16938827,
           16938960-16939183,16939648-16939707
          Length = 602

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  YVTRKYCNKMWKLTVLGVFLTVTYVYSHT 155
           YV+R Y   MW L+ L + LT TY  S T
Sbjct: 297 YVSRWYMRMMWPLSWLSMVLTWTYGSSFT 325


>05_05_0272 - 23738514-23738817,23739382-23740748
          Length = 556

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 258 HCITYNFSRTDEPGQYQLEQDSQHFILGLTPLKHDYKYTGVLTVPDPAVP 407
           HC++       +PG Y     S  FI     +    +Y G  T P PAVP
Sbjct: 266 HCLSVLVDADQKPGDYYAVA-STRFIHEAKSVSAVIRYAGSSTPPSPAVP 314


>09_04_0524 + 18321110-18323978,18324098-18324576
          Length = 1115

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +2

Query: 419 GSIPSERCRLSKLHSFGNGLHNIR 490
           G+IP E CRLSKL S     +++R
Sbjct: 146 GAIPPELCRLSKLESLSLNSNSLR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,950,884
Number of Sequences: 37544
Number of extensions: 432318
Number of successful extensions: 1004
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)