Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_G02
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16594| Best HMM Match : DUF1265 (HMM E-Value=2.6)                   30   2.5  
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                29   4.4  
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)                   29   5.8  
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)          28   7.6  

>SB_16594| Best HMM Match : DUF1265 (HMM E-Value=2.6)
          Length = 734

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 666 PDGASEGVNIXINPETFSSHNIGEXVRKTGGAIADGVEYXVEAG 797
           P G ++ +   + P     H IG  + K GG IA G    ++AG
Sbjct: 16  PTGVTDSLRSLVRPPQSHWHKIGGSLVKRGGQIAVGALEGIDAG 59


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 782 VFH--AVSNSSASFPDXFADVVRRESLGVYXYVHA-FRCA 672
           +FH  +  +SS +FP     V  +++ G+Y Y ++ FRC+
Sbjct: 160 IFHHDSTKSSSCTFPPTAGSVSSQDNFGLYEYANSNFRCS 199


>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
          Length = 1164

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 350  LETRLQIYWCPDST*PRCSCKDEGSIPSERC 442
            L  +L    CP+ T PRC+C+ +GS P   C
Sbjct: 1131 LMVQLATQTCPNQTCPRCTCQ-QGSRPQCTC 1160


>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
          Length = 1217

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 471 TDYTTYAAVFTCQKLAFAHRRSATILSRTKELDKMFVD 584
           T  TT+  ++ C +L F    SA I  R  ++D++F D
Sbjct: 341 TTLTTHKGLYACNRLPFGVASSAAIFQR--QMDRIFKD 376


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,623,469
Number of Sequences: 59808
Number of extensions: 524726
Number of successful extensions: 1519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)