Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G02
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M16696-1|AAA51764.1| 189|Homo sapiens APOD protein. 75 3e-13
J02611-1|AAB59517.1| 189|Homo sapiens APOD protein. 75 3e-13
CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein. 75 3e-13
CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein. 75 3e-13
BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein. 75 3e-13
BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein. 75 3e-13
BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein. 75 3e-13
S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein. 53 1e-06
X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for ... 32 2.8
BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein... 32 2.8
AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein... 32 2.8
AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein... 32 2.8
AF215824-1|AAG43987.1| 754|Homo sapiens a disintegrin and metal... 31 4.8
>M16696-1|AAA51764.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>J02611-1|AAB59517.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>CR541773-1|CAG46572.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>CR456838-1|CAG33119.1| 189|Homo sapiens APOD protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>BT019861-1|AAV38664.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>BT019860-1|AAV38663.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>BC007402-1|AAH07402.1| 189|Homo sapiens apolipoprotein D protein.
Length = 189
Score = 74.9 bits (176), Expect = 3e-13
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 4/174 (2%)
Frame = +3
Query: 156 YHLGSCPIVEPMSGFEMNRLLGVWYVIQKTSTA---SHCITYNFSRTDEPGQYQLEQDSQ 326
+HLG CP F++N+ LG WY I+K T CI N+S + L Q+
Sbjct: 23 FHLGKCPNPPVQENFDVNKYLGRWYEIEKIPTTFENGRCIQANYSLMENGKIKVLNQE-- 80
Query: 327 HFILGLTPLKHDYKYTGVLTVPDPAVPARMKVRFPLSVAGSASYTVLATDYTTYAAVFTC 506
L + G T + PA+++V+F + SA Y +LATDY YA V++C
Sbjct: 81 -----LRADGTVNQIEGEATPVNLTEPAKLEVKFSWFMP-SAPYWILATDYENYALVYSC 134
Query: 507 Q-KLAFAHRRSATILSRTKELDKMFVDKMRLKLSSYGVDPYDLSIISQNDCPGL 665
+ H A IL+R L VD ++ L+S +D +++ Q +CP L
Sbjct: 135 TCIIQLFHVDFAWILARNPNLPPETVDSLKNILTSNNIDVKKMTVTDQVNCPKL 188
>S80440-1|AAB35919.1| 98|Homo sapiens apolipoprotein D protein.
Length = 98
Score = 53.2 bits (122), Expect = 1e-06
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +3
Query: 405 PARMKVRFPLSVAGSASYTVLATDYTTYAAVFTCQ-KLAFAHRRSATILSRTKELDKMFV 581
PA+++V+F + SA Y +LATDY YA V++C + H A IL+R L V
Sbjct: 11 PAKLEVKFSWFMP-SAPYWILATDYENYALVYSCTCIIQLFHVDFAWILARNPNLPPETV 69
Query: 582 DKMRLKLSSYGVDPYDLSIISQNDCPGL 665
D ++ L+S +D +++ Q +CP L
Sbjct: 70 DSLKNILTSNNIDVKKMTVTDQVNCPKL 97
>X00129-1|CAA24959.1| 199|Homo sapiens protein ( Human mRNA for
retinol binding protein (RBP). ).
Length = 199
Score = 31.9 bits (69), Expect = 2.8
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Frame = +3
Query: 198 FEMNRLLGVWYVIQKTSTASHCITYNFSR---TDEPGQYQLEQDSQHFILGLTPLKHDYK 368
F+ R G WY + K + N DE GQ + +L + D
Sbjct: 31 FDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM- 89
Query: 369 YTGVLTVPDPAVPARMKVRF----PLSVAGSASYTVLATDYTTYAAVFTCQKL 515
V T D PA+ K+++ G+ + ++ TDY TYA ++C+ L
Sbjct: 90 ---VGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLL 139
>BC020633-1|AAH20633.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 31.9 bits (69), Expect = 2.8
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Frame = +3
Query: 198 FEMNRLLGVWYVIQKTSTASHCITYNFSR---TDEPGQYQLEQDSQHFILGLTPLKHDYK 368
F+ R G WY + K + N DE GQ + +L + D
Sbjct: 33 FDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM- 91
Query: 369 YTGVLTVPDPAVPARMKVRF----PLSVAGSASYTVLATDYTTYAAVFTCQKL 515
V T D PA+ K+++ G+ + ++ TDY TYA ++C+ L
Sbjct: 92 ---VGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLL 141
>AL356214-6|CAH72329.1| 199|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 199
Score = 31.9 bits (69), Expect = 2.8
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Frame = +3
Query: 198 FEMNRLLGVWYVIQKTSTASHCITYNFSR---TDEPGQYQLEQDSQHFILGLTPLKHDYK 368
F+ R G WY + K + N DE GQ + +L + D
Sbjct: 31 FDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM- 89
Query: 369 YTGVLTVPDPAVPARMKVRF----PLSVAGSASYTVLATDYTTYAAVFTCQKL 515
V T D PA+ K+++ G+ + ++ TDY TYA ++C+ L
Sbjct: 90 ---VGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLL 139
>AL356214-5|CAH72328.1| 201|Homo sapiens retinol binding protein 4,
plasma protein.
Length = 201
Score = 31.9 bits (69), Expect = 2.8
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 7/113 (6%)
Frame = +3
Query: 198 FEMNRLLGVWYVIQKTSTASHCITYNFSR---TDEPGQYQLEQDSQHFILGLTPLKHDYK 368
F+ R G WY + K + N DE GQ + +L + D
Sbjct: 33 FDKARFSGTWYAMAKKDPEGLFLQDNIVAEFSVDETGQMSATAKGRVRLLNNWDVCADM- 91
Query: 369 YTGVLTVPDPAVPARMKVRF----PLSVAGSASYTVLATDYTTYAAVFTCQKL 515
V T D PA+ K+++ G+ + ++ TDY TYA ++C+ L
Sbjct: 92 ---VGTFTDTEDPAKFKMKYWGVASFLQKGNDDHWIVDTDYDTYAVQYSCRLL 141
>AF215824-1|AAG43987.1| 754|Homo sapiens a disintegrin and
metalloproteinase 7 protein.
Length = 754
Score = 31.1 bits (67), Expect = 4.8
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 177 IVEPMSGFEMNRLLGVWYVIQKTSTASH-CITYNFSRTDEPGQYQLEQDSQHFILGLTPL 353
++EP+ + L Y ++ A++ C NF+R PG + E+DS+ I G+
Sbjct: 141 LIEPVKYSDEGEHLVFKYNLRVPYGANYSCTELNFTRKTVPGDNESEEDSK--IKGI--- 195
Query: 354 KHDYKYTGVLTVPDPAVPAR 413
HD KY + V D V R
Sbjct: 196 -HDEKYVELFIVADDTVYRR 214
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,106,284
Number of Sequences: 237096
Number of extensions: 2460534
Number of successful extensions: 4350
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4343
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -