Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G01
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 101 5e-23
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 35 0.008
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 33 0.024
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 33 0.032
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 29 0.52
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 28 0.92
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.2
SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe... 26 3.7
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 26 3.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 3.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 4.9
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch... 25 6.5
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 25 6.5
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 8.5
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 25 8.5
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 101 bits (243), Expect = 5e-23
Identities = 45/80 (56%), Positives = 64/80 (80%)
Frame = +1
Query: 61 KVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 240
+VQ VM+ PIN IF+ LQ + V IWL+E ++R++G I GFDE+MNIVLD+A +V K+
Sbjct: 4 RVQKVMIPPINFIFKLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKN 63
Query: 241 KNRKQIGRIMMKGDNITLIQ 300
N++++GRI++KGDNITLIQ
Sbjct: 64 -NKRELGRILLKGDNITLIQ 82
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 34.7 bits (76), Expect = 0.008
Identities = 15/57 (26%), Positives = 38/57 (66%)
Frame = +1
Query: 130 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
Q+++ N + ++ G + G+D ++NIVL+++ E + + K IG + ++G+++ +I+
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVK-IGSVAIRGNSVIMIE 71
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.1 bits (72), Expect = 0.024
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 133 IWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 297
+W+ G +VGFD+Y+NIVL + E + ++ +++ G+ + ++
Sbjct: 19 LWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCML 73
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 32.7 bits (71), Expect = 0.032
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 160 RIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKG 279
+I G + GFD+ MN+VLD+ EE ++ K G I G
Sbjct: 45 QITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLG 84
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 28.7 bits (61), Expect = 0.52
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEV-HMKSKN 246
G ++ FD +MN+VL + +E H+K +N
Sbjct: 26 GQLLAFDGFMNLVLSDCQEYRHIKKQN 52
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.9 bits (59), Expect = 0.92
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 207 SRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEV 359
S++ S ++KQ+T + N + + T + EP+ L +FAK+ V
Sbjct: 378 SKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANV 428
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEAEEV 228
+ G + +DE++N+VL +AEE+
Sbjct: 32 LNGRLHAYDEHLNMVLGDAEEI 53
>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 746
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 288 NTHTEREPQRVSVKLGYKFAKSEVIPS 368
+ HT R +S+KL +++ S+VIP+
Sbjct: 308 DNHTSRVAILISMKLAFQYQLSQVIPT 334
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 288 YVVSLHHYSSYLFSVFRFHMDFFSFVENNIHVF 190
Y+VS+ S Y+ R H ++ENNI VF
Sbjct: 96 YLVSMEDVSIYVIDSHRPHNLNNIYIENNIFVF 128
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 240 EKQKTNRKNNDEGRQHNTHTEREPQR 317
+ + +NND R + HT REPQ+
Sbjct: 1430 QSRSFTNENNDNLRSVSRHTRREPQQ 1455
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.8 bits (54), Expect = 3.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 195 HEYCSRRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKL 332
H + S ++ YE E QK +KN+ +NT RE Q V+ KL
Sbjct: 176 HTQQEKASLQTNYEFELQKLTQKNSIL-ENNNTWLSRELQGVNDKL 220
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 210 RRS*RSPYEIEKQKTNRKNNDEGRQHNTHTEREPQRVSVKLGYKFAKSEVI 362
RRS ++ ++EK+K K D+ ++ +T +++ Q ++ G K E +
Sbjct: 261 RRSAQNSAKLEKEKAKEKQKDKDQEQDTVSDKN-QIDEIEKGQKEVDEEPV 310
>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 186
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 46 YKGPPKVQXVMVQPINLIFRYLQNRSRVQIWLYENV 153
YKG + V++ + LIF + + SR W N+
Sbjct: 41 YKGAWVIHIVLIAALRLIFHAIPSVSRELAWTLTNL 76
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 190 HQNPRCVLQSSDSRFHIAKFAHDS 119
H N R L S DSRFH H +
Sbjct: 308 HHNVRTTLFSDDSRFHSKIHTHST 331
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 440 LEIEKTSNPVTVISLIHM*LELLFTRNDFTFSKFIT*LHTDALG 309
LE+ S T ++ + +LLF +N+ F KF+ H +G
Sbjct: 533 LELTSESLSSTNDTIRRLQRDLLFLQNELRFEKFVRQQHLQNIG 576
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 24.6 bits (51), Expect = 8.5
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 166 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNI 288
+G + D YMN+ L AEE+ + +G I+++ +N+
Sbjct: 31 KGTLQSVDSYMNLQLLNAEEL-VDGVKTGDLGEILIRCNNV 70
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,311
Number of Sequences: 5004
Number of extensions: 34811
Number of successful extensions: 112
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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