Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G01
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 98 4e-21
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 69 2e-12
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 42 2e-04
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 41 5e-04
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 40 0.001
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 31 0.69
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 29 2.1
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 29 2.1
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 27 8.6
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 97.9 bits (233), Expect = 4e-21
Identities = 45/79 (56%), Positives = 61/79 (77%)
Frame = +1
Query: 61 KVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKS 240
KVQ +M QPI ++R+QIWL+E +LRIEG I+GFDEYMN+VLD+AEE+++K
Sbjct: 5 KVQRIMTQPI---------KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKK 55
Query: 241 KNRKQIGRIMMKGDNITLI 297
RK +GRI++KGDNITL+
Sbjct: 56 DTRKSLGRILLKGDNITLM 74
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 69.3 bits (162), Expect = 2e-12
Identities = 29/49 (59%), Positives = 40/49 (81%)
Frame = +1
Query: 151 VNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLI 297
V++ + H GFDEYMN+VLDEAEE+++K RK +GRI++KGDNITL+
Sbjct: 88 VSVTLHVHAKGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
Score = 64.9 bits (151), Expect = 3e-11
Identities = 30/50 (60%), Positives = 40/50 (80%)
Frame = +1
Query: 61 KVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVL 210
KVQ +M QPINLIFR+LQ+++R+QIWL+E +LRIEG I+ Y+N VL
Sbjct: 5 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRII---MYVNSVL 51
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/51 (35%), Positives = 34/51 (66%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N N + G + GFD++MN+V+D EV+ KN IG ++++G+++ +I+
Sbjct: 37 NANRVVIGTLRGFDQFMNLVVDNTVEVNGNEKN--DIGMVVIRGNSVVMIE 85
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/66 (27%), Positives = 42/66 (63%)
Frame = +1
Query: 103 RYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGD 282
+Y+ + ++++ N N I G + GFD++MN+V+D EV+ ++ IG ++++G+
Sbjct: 12 KYMDKKLQIKL----NANRVIVGTLRGFDQFMNLVVDNTVEVN--GNDKTDIGMVVVRGN 65
Query: 283 NITLIQ 300
++ +I+
Sbjct: 66 SVVMIE 71
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 39.9 bits (89), Expect = 0.001
Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +1
Query: 130 QIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK--QIGRIMMKGDNITLIQ 300
+IW+ + + G + GFD Y+N+VL++ E ++ R+ ++ +I++ G+NI +++
Sbjct: 91 KIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGNNIAIVR 149
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 30.7 bits (66), Expect = 0.69
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEAEEVHMK-------SKNRKQIGRIMMKGDNITLI 297
+ G + G+D+ +N+VLDEA E + S +Q+G I+ +G + L+
Sbjct: 36 VTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGKTRQLGLIVCRGTAVMLV 87
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 166 EGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
+G++V D YMN+ L EE ++ + +G I+++ +N+ ++
Sbjct: 43 DGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 86
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +1
Query: 157 LRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
+ +G++V D YMN+ L EE ++ + +G I+++ +N+ ++
Sbjct: 79 MEYKGYLVSVDSYMNLQLANTEE-YIDGQFSGNLGEILIRCNNVLYLR 125
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEE 225
N I G + GFD+ NI+LDE+ E
Sbjct: 21 NDGRNIVGTLRGFDQATNIILDESHE 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,418,537
Number of Sequences: 37544
Number of extensions: 190592
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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