Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_G01
(505 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 151 2e-36
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 151 2e-36
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 151 2e-36
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 151 2e-36
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 146 3e-35
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 141 1e-33
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 129 5e-30
S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein. 80 5e-15
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 38 0.015
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 38 0.015
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 38 0.015
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 38 0.015
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 38 0.015
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.080
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 36 0.080
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 36 0.080
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 36 0.080
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 34 0.32
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 29 9.2
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 29 9.2
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 29 9.2
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 29 9.2
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 29 9.2
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 29 9.2
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 29 9.2
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 29 9.2
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 29 9.2
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 29 9.2
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 29 9.2
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 29 9.2
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 29 9.2
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 29 9.2
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 29 9.2
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 29 9.2
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 29 9.2
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 29 9.2
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 29 9.2
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 29 9.2
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 29 9.2
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 29 9.2
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 29 9.2
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 151 bits (365), Expect = 2e-36
Identities = 68/88 (77%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 216
MAY+G KVQ VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 217 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 151 bits (365), Expect = 2e-36
Identities = 68/88 (77%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 216
MAY+G KVQ VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 217 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 151 bits (365), Expect = 2e-36
Identities = 68/88 (77%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 216
MAY+G KVQ VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 217 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 151 bits (365), Expect = 2e-36
Identities = 68/88 (77%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 216
MAY+G KVQ VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD 60
Query: 217 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 146 bits (355), Expect = 3e-35
Identities = 66/88 (75%), Positives = 80/88 (90%), Gaps = 1/88 (1%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDE 216
MAY G KVQ VMVQPINLIFRYLQNRS++Q+WLYE VN++IEG I+GFDEYMN+VLD+
Sbjct: 1 MAYSGQGQKVQKVMVQPINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDD 60
Query: 217 AEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
AEE+H K+K+RKQ+GRIM+KGDNITL+Q
Sbjct: 61 AEEIHSKTKSRKQLGRIMLKGDNITLLQ 88
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 141 bits (341), Expect = 1e-33
Identities = 61/76 (80%), Positives = 73/76 (96%)
Frame = +1
Query: 73 VMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRK 252
VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H K+K+RK
Sbjct: 2 VMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK 61
Query: 253 QIGRIMMKGDNITLIQ 300
Q+GRIM+KGDNITL+Q
Sbjct: 62 QLGRIMLKGDNITLLQ 77
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 129 bits (312), Expect = 5e-30
Identities = 55/70 (78%), Positives = 67/70 (95%)
Frame = +1
Query: 91 NLIFRYLQNRSRVQIWLYENVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIM 270
NLIFRYLQNRSR+Q+WLYE VN+RIEG I+GFDEYMN+VLD+AEE+H K+K+RKQ+GRIM
Sbjct: 19 NLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIM 78
Query: 271 MKGDNITLIQ 300
+KGDNITL+Q
Sbjct: 79 LKGDNITLLQ 88
>S60260-1|AAC60592.1| 104|Homo sapiens B-raf protein.
Length = 104
Score = 79.8 bits (188), Expect = 5e-15
Identities = 37/48 (77%), Positives = 42/48 (87%), Gaps = 1/48 (2%)
Frame = +1
Query: 40 MAYKGP-PKVQXVMVQPINLIFRYLQNRSRVQIWLYENVNLRIEGHIV 180
MAY+G KVQ VMVQPINLIFRYLQNRSR+Q+WLYE VN+RIEG I+
Sbjct: 1 MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCII 48
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 10 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 59
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 38.3 bits (85), Expect = 0.015
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +1
Query: 148 NVNLRIEGHIVGFDEYMNIVLDEAEEVHMKSKNRKQIGRIMMKGDNITLIQ 300
N ++G + GFD +MN+V+DE E+ S + IG ++++G++I +++
Sbjct: 22 NGGRHVQGILRGFDPFMNLVIDECVEM-ATSGQQNNIGMVVIRGNSIIMLE 71
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.080
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 297
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.080
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 297
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.080
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 297
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 35.9 bits (79), Expect = 0.080
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNITLI 297
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+ +I
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVI 70
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 33.9 bits (74), Expect = 0.32
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Frame = +1
Query: 163 IEGHIVGFDEYMNIVLDEA-EEVHMKSKNRKQI--GRIMMKGDNI 288
I G + GFD+ +N++LDE+ E V S+ +Q+ G +++GDN+
Sbjct: 23 IVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNV 67
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 7 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 22 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 70
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 22 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 70
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 77
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 29.1 bits (62), Expect = 9.2
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = +1
Query: 169 GHIVGFDEYMNIVLDEAEEVH-MKSKNRKQ--------IGRIMMKGDNI 288
G FD++MN++L + +E +K KN KQ +G ++++G+N+
Sbjct: 29 GTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENL 77
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,603,820
Number of Sequences: 237096
Number of extensions: 1194049
Number of successful extensions: 2500
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 2433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2500
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4649883964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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