Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F23
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0) 157 5e-51
SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011) 31 0.81
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 31 1.1
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 28 5.7
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 28 5.7
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 28 5.7
SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3) 28 7.5
SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15) 27 9.9
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3) 27 9.9
SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
Length = 157
Score = 157 bits (380), Expect(2) = 5e-51
Identities = 76/114 (66%), Positives = 94/114 (82%)
Frame = +1
Query: 43 STKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVP 222
S KI+K G A+ FE ISQA++ELE NSD+KAQLRELYI+ AKEI++ KK+III+VP
Sbjct: 8 SAKIVKPQGETANEFEQGISQAILELEMNSDMKAQLRELYISSAKEIDVGGKKAIIIFVP 67
Query: 223 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRS 384
+P+++AFQKIQ RLVRELEKKFSGKHVV V R+ILP+P+ K+R KQKRPRS
Sbjct: 68 VPQIRAFQKIQTRLVRELEKKFSGKHVVIVAQRRILPRPTRKSR-NQKQKRPRS 120
Score = 62.5 bits (145), Expect(2) = 5e-51
Identities = 25/34 (73%), Positives = 31/34 (91%)
Frame = +1
Query: 496 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 597
HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154
>SB_44647| Best HMM Match : C_tripleX (HMM E-Value=0.00011)
Length = 812
Score = 31.1 bits (67), Expect = 0.81
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Frame = +1
Query: 127 NSDLKAQLRELYITKAKEIE---LHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFS-- 291
+ + K L+E+ I ++K+ E + + KS PKLKA Q + + KK
Sbjct: 261 HEEKKEDLKEVVIKQSKQDEATAIKDSKSESKPASKPKLKAVQNDAPKKANKPAKKAKKP 320
Query: 292 ---GKHVVFVGDRKILPKPSHKTRVANKQKRPRS 384
K V+ LP+ +H+ AN Q+RP++
Sbjct: 321 VKRAKKVLNKKKMDTLPRGAHRPASANAQRRPQN 354
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 30.7 bits (66), Expect = 1.1
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 7/119 (5%)
Frame = +1
Query: 34 VKMSTKI--IKASGAEADSFETSISQALVELETNSDLKAQLRE----LYITKAKEIELHN 195
V+MS ++ +++SG +S E+ + E N+ LK +L E L +T+ +E E+ N
Sbjct: 1673 VRMSERVSVLESSGGTMNSEESFFLE-----EDNAILKRKLDEKETALKVTQDREREM-N 1726
Query: 196 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILP-KPSHKTRVANKQ 369
K + +YV M KL++ Q ELEK+ ++ ++I P K S T VA +
Sbjct: 1727 DKLMALYVNMSKLESTQGTLEEKNAELEKE------LYSAQQEIQPLKDSFNTAVAENE 1779
>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -2
Query: 581 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 402
T+R ++ ++DW ++ C CW +S T+ S LT +++P + + K A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 28.3 bits (60), Expect = 5.7
Identities = 30/159 (18%), Positives = 62/159 (38%), Gaps = 3/159 (1%)
Frame = +1
Query: 1 RPADAFPPXKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKE 180
+P +V S +++KA + D + + L + + ++ + QL + + +
Sbjct: 258 QPKQQLDSSQVRSRSGRVVKAKKLDYDDVISPKFEPLKKEDNSNKISTQLLSVK-RELES 316
Query: 181 IELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSG---KHVVFVGDRKILPKPSHKT 351
E K + +P P K + V E +K KH + K P+
Sbjct: 317 GETPPSKIQRLELPEPDKSINSKDSLNHVEEKPRKVHKVRLKHATVPVEGKEAPQ----N 372
Query: 352 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVK 468
V + + R + + ++ E +FP E +GK+ + K
Sbjct: 373 NVMKSRPKVRIKNCVVAHSSVFEKALFPEESLGKKYKKK 411
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 79 DSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPM-PKLKAFQ 246
+ ++T ++ L + L+ +RELY +E E KKS++ ++ + PK+K +
Sbjct: 171 EQWDTILTMIPARLVQSPQLQPYIRELYAEVKQEYEASIKKSMVQHILVKPKVKGVE 227
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 131 PTSKPNFGSFTLQKLKKLNYTIRS 202
P S N+G FT+++LK +YT +S
Sbjct: 1415 PLSNDNYGDFTMRRLKVSSYTEQS 1438
>SB_48206| Best HMM Match : LTXXQ (HMM E-Value=3)
Length = 513
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 336 LRQDLTVSNKDYMFTTELLFELTDKPDLDLLKGLQFRHRHIDDDRLL 196
LRQ L SN +L L K D+ K +H+ DD LL
Sbjct: 170 LRQRLNSSNPSISSPINILDALCQKHDIAYSKSKDLDDKHVADDNLL 216
>SB_56433| Best HMM Match : Metallophos (HMM E-Value=1.7e-15)
Length = 417
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 9/42 (21%)
Frame = +2
Query: 110 WSNSKPTPTSKPN--------FG-SFTLQKLKKLNYTIRSRS 208
WS+ KPTP KPN FG T Q L+K N+ + RS
Sbjct: 125 WSDPKPTPGCKPNTFRGGGCYFGPDVTSQVLRKHNFELLVRS 166
>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 932
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 521 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 414
V+CW L + + + EP N L +L ++ GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373
>SB_47345| Best HMM Match : Neural_ProG_Cyt (HMM E-Value=8.3)
Length = 151
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/26 (42%), Positives = 21/26 (80%)
Frame = +1
Query: 217 VPMPKLKAFQKIQIRLVRELEKKFSG 294
VP+P++ A QK++ +L R++E+K +G
Sbjct: 69 VPLPQVSAMQKVKGKL-RDMEQKLNG 93
>SB_43496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/101 (19%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +1
Query: 70 AEADSFETSISQALVELETNSDLKAQLRELYITKAKEI-----ELHNKKSIIIYVPMPKL 234
A+ + + Q E++T+ + K +RE ITK K + E +++++ + K+
Sbjct: 237 AQRKTLSDAAKQCSTEIKTSENKKMTIREDMITKRKHVRDRRREHREEETVLRKDELDKV 296
Query: 235 KAFQKIQIRLVRELEKKF---SGKHVVFVGDRKILPKPSHK 348
+ + + +RE+E++F K+ + +R++ + K
Sbjct: 297 AKLYEEEKQDLREMEQEFQNMEAKYNAILEERRLAAEAEKK 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,938,190
Number of Sequences: 59808
Number of extensions: 381015
Number of successful extensions: 1092
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -