Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F22
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   2.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   4.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   5.9  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 565 SFNSLIAKYLFSPMLTFLKYL*PISCRNFLSYLYTS 458
           + + ++ ++LF+   TF+  L  +S  N LS + +S
Sbjct: 459 NLSEMVKQFLFTQKFTFVAGLATLSVLNLLSVIKSS 494


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = -2

Query: 490 CRNFLSYLYTSLEKTAPSLCNGDCLDN 410
           C++F    Y ++   +    NG+C+ N
Sbjct: 25  CKSFFGRTYNNISSISECKNNGECVIN 51


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 388 ICRKSLTSALVSLEHV 341
           +C K  T+ALV  +H+
Sbjct: 199 VCHKKFTNALVLQQHI 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,025
Number of Sequences: 336
Number of extensions: 3771
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)