Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F22
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   2.1  
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    27   3.7  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.9  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   8.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.5  

>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 459 LVYKYDKKFRHDIGYRYFKKVNIGLKRYLA---IKLLKDIENFVGILPEKNNDYL-PTRQ 626
           ++ KYDK F      +YFK+V+  + R  +   + +L+ + N +   P + + +   +++
Sbjct: 281 IILKYDKPFVTQYKEKYFKRVSRMISRLTSLTCVPMLRLLSNMISNFPNEVHQFANDSKR 340

Query: 627 MLEYILVRLMT 659
            L  +   L+T
Sbjct: 341 PLSKLFSNLIT 351


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 28/90 (31%), Positives = 44/90 (48%)
 Frame = +3

Query: 312 DANLQPPPVNTCSSETSADVKDLRHICNNIILILSRQSPLHREGAVFSRLVYKYDKKFRH 491
           D N++ P +N   S  S+ ++  +  C N     S QS L+ E   +++ V+ ++ K R 
Sbjct: 88  DTNVELPKINLPDSSLSSKLQSCKSACEN-----SSQSLLNVE-QQYAQQVHFWE-KIRT 140

Query: 492 DIGYRYFKKVNIGLKRYLAIKLLKDIENFV 581
           DI YR       GL+   A+K L D  N V
Sbjct: 141 DI-YRE------GLRSDAAVKSLNDFVNNV 163


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 423 SPLHREGAVFSRLVYKYDKKFRHDIGYRYFKKVN 524
           S +H     FS+++ KYDK     +   Y K+VN
Sbjct: 264 SYVHLNYTGFSKILKKYDKTLGSSLRESYMKRVN 297


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 372 KDLRHICNNIILILSRQSPLHR 437
           K  RH+ N  +LIL+RQ  LH+
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHK 613


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 19/73 (26%), Positives = 28/73 (38%)
 Frame = +3

Query: 177  CAYFH*R*TANKLLETLCTEVICXXXXXXXXXXTRFDIKMIEPWNDANLQPPPVNTCSSE 356
            C  F    T    L   C  ++            RF +KM+E W     + P VN+ S  
Sbjct: 1738 CGSFEPWGTPLDYLSAGCPTLVANLWDVTDKDIDRFSLKMLESWGLFENKAPFVNSTSIC 1797

Query: 357  TSADVKDLRHICN 395
            T+  V + R  C+
Sbjct: 1798 TA--VSESRSCCH 1808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,563
Number of Sequences: 5004
Number of extensions: 61643
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)