Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F22
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0259 - 1996427-1998772                                           29   5.1  
12_02_0504 - 19771191-19772134,19772210-19774892                       28   8.9  
09_04_0650 - 19214589-19215106,19215839-19215935,19216100-192161...    28   8.9  

>03_01_0259 - 1996427-1998772
          Length = 781

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -2

Query: 673 IILENVINLTKIYSSICRVGK*SLFFSGRIPTKFSMSFNSLIAKYLFSPMLT 518
           ++LE    L ++Y  + +V      F G+I  K  +S+N++IA Y++  M T
Sbjct: 345 VVLETA--LLEMYGKVGKVESSEKIF-GKIANKTLVSWNNMIAAYMYKEMYT 393


>12_02_0504 - 19771191-19772134,19772210-19774892
          Length = 1208

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 514 LKYL*PISCRNFLSYLYTSLEKTAPSLCNGDCLDNINIILLQICRKSLTSALVSLEHV 341
           L+Y+  + C   L  LY      +P LC  + L ++  + L  C  S+ + +  L+H+
Sbjct: 582 LRYV--LQCSRHLRLLYLRGPSLSPELCELNTLTHLRYLFLFSCVGSIINHVRGLDHL 637


>09_04_0650 -
           19214589-19215106,19215839-19215935,19216100-19216189,
           19216323-19216436,19217126-19217201,19217329-19217618
          Length = 394

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 429 LHREGAVFSRLVYKYDKKFRHDIGYRYFKKVNIGLKRYLAIKL 557
           L +E  V  RLVYK+  + R    ++Y  KV   ++  LA  L
Sbjct: 30  LQQEAGVLERLVYKHRNQHRGAAYFQYLLKVRRDVRLLLAAGL 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,620,820
Number of Sequences: 37544
Number of extensions: 335239
Number of successful extensions: 701
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)