Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F22
         (737 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)                 28   6.9  
SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)                 28   6.9  

>SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 26/87 (29%), Positives = 41/87 (47%)
 Frame = +3

Query: 432 HREGAVFSRLVYKYDKKFRHDIGYRYFKKVNIGLKRYLAIKLLKDIENFVGILPEKNNDY 611
           H++  V +R V  YD++FR   G   FK   + L   L IK+L+     +  LPE++   
Sbjct: 180 HKDVKVLTRAVLAYDREFREVGGIPAFKSA-VTLPS-LCIKILR-----LNHLPEQSVAV 232

Query: 612 LPTRQMLEYILVRLMTFSKIMVRICIC 692
           +P R   E  +  L  +S    R  +C
Sbjct: 233 IPHRGYRENDVHSLKQYSVDQARQPLC 259


>SB_39979| Best HMM Match : RVT_1 (HMM E-Value=4.6e-12)
          Length = 792

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 412 CPDSHHYIEKGRFSLDLCINMTRSFDTILATDTLKK 519
           C      IE G+FS  L +++++SFDT+  +  L+K
Sbjct: 322 CDKIQKAIELGQFSCGLFLDLSKSFDTVDHSILLRK 357


>SB_22958| Best HMM Match : RasGAP_C (HMM E-Value=0.23)
          Length = 1178

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 462  VYKYDKKFRHDIGYRYFKKV 521
            +YKYDK+ RH   Y+Y K+V
Sbjct: 1084 MYKYDKQVRHPDMYKYDKQV 1103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,132,969
Number of Sequences: 59808
Number of extensions: 409669
Number of successful extensions: 890
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)