Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F21
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.) 279 2e-75
SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058) 31 0.78
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 30 2.4
SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_41612| Best HMM Match : OstA (HMM E-Value=5.2) 29 5.5
SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24) 28 7.3
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_21898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 279 bits (683), Expect = 2e-75
Identities = 141/208 (67%), Positives = 157/208 (75%)
Frame = +2
Query: 149 IKMGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDS 328
+KMGIKFLEV++PF S+LPE+AKPERKI PLFGIMSSDS
Sbjct: 724 LKMGIKFLEVLRPFISVLPEVAKPERKI----------------------PLFGIMSSDS 761
Query: 329 ADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKL 508
ADPFYW+RVILASNRGTLMELGISPIVTSGLIMQLLAG+KIIEVGDTPKDRALFNGAQKL
Sbjct: 762 ADPFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGSKIIEVGDTPKDRALFNGAQKL 821
Query: 509 FGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLFVAXXXXXXXXXXXXXXXXXXXX 688
FG++IT+GQA+VYVMTGMYG+PS++G G+CLLIIIQLF A
Sbjct: 822 FGIIITIGQAVVYVMTGMYGDPSDLGPGICLLIIIQLFCAGLIVLLLDELLQKGYGLGSG 881
Query: 689 XXXXXATNICETIVWKAFSPXTVNTGRG 772
ATNICETIVWKAFSP T+NTGRG
Sbjct: 882 ISLFIATNICETIVWKAFSPATINTGRG 909
>SB_4795| Best HMM Match : CLN3 (HMM E-Value=0.058)
Length = 878
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -1
Query: 598 AHSGTNFTGFAIHSSHYINNSLTNSNH 518
A++G+NFT A+HS++Y + T SN+
Sbjct: 525 AYTGSNFTMTALHSAYYTMTAYTGSNY 551
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = -1
Query: 706 SNXQRDTRTQSISFXEQFIEQQHNKTGHKQLYDNEEAHSGTNFTGFAIHSSHYINNSLTN 527
SN RT S + + TGH A++G+N+T A S YI T
Sbjct: 569 SNYTMTARTGSYYTMTAYTGSNYIMTGHTGSNYTMTAYTGSNYTMTAYTGSSYIMTGHTG 628
Query: 526 SNH 518
SN+
Sbjct: 629 SNY 631
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = -1
Query: 706 SNXQRDTRTQSISFXEQFIEQQHNKTGHKQLYDNEEAHSGTNFTGFAIHSSHYINNSLTN 527
SN RT S + + TGH Y A++ +++T A S+Y + T
Sbjct: 739 SNYTMTARTGSYYTMTAYTGSNYIMTGHTGSYYTMTAYTVSSYTMTAYTGSNYTMTAYTG 798
Query: 526 SNH 518
SN+
Sbjct: 799 SNY 801
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 29.9 bits (64), Expect = 2.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = +1
Query: 400 TYCNIRTHHAVACWC*NH*SW*HSERQGFV*WCTEIIWYGDYCWSGYCLCNDWNVWRTQ* 579
TY N TH+ + + N+ S H+ + W T W WS Y C+ +N W T
Sbjct: 324 TYNNWSTHNNWSTY--NNWST-HNNWSTYNNWSTHNNWSILNNWSTYDNCSTYNNWSTHN 380
Query: 580 NW 585
NW
Sbjct: 381 NW 382
>SB_59669| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3511
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = -2
Query: 495 PLNKALSFGVSPTSMILAPASNCMMS 418
PL LS GV PTS +L A NC MS
Sbjct: 3173 PLIFVLSPGVDPTSALLQLAENCGMS 3198
>SB_41612| Best HMM Match : OstA (HMM E-Value=5.2)
Length = 442
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Frame = -1
Query: 688 TRTQSISFXEQFIEQQHNKTGHKQLYDNEEAHSGTNFTGFAIHSSH----YINNSLTNSN 521
T Q I Q + HN H + G N +++SH Y NN N+N
Sbjct: 236 TNNQGIHTNNQSVHTSHNICIHTNNQGLNTNNKGINTNNQGVNTSHNICIYTNNQDFNTN 295
Query: 520 H---HTK*FLCTIKQSPVFRSVTNFNDFSTSKQL 428
+ HT +C + TN DF TS +
Sbjct: 296 NQGVHTSHNICIHTNNQGLN--TNNQDFDTSDNI 327
>SB_23940| Best HMM Match : MuDR (HMM E-Value=0.24)
Length = 685
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 366 DARITRIQ*KGSALSDDIIPNKGIWQHT 283
+++I I SALS+ IIPN+ I +HT
Sbjct: 341 ESKINSIAKSSSALSNSIIPNRYILRHT 368
>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.9 bits (59), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 505 IIWYGDYCWSGYCLCND 555
+I YG+ CW+ +C C D
Sbjct: 246 LITYGECCWTLFCFCMD 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,489,585
Number of Sequences: 59808
Number of extensions: 480942
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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