Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F20
(790 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ... 129 5e-31
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd... 114 2e-26
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 43 4e-05
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 27 3.1
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 27 3.1
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 4.0
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 27 4.0
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 5.4
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 26 7.1
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch... 26 7.1
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.4
>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 937
Score = 129 bits (311), Expect = 5e-31
Identities = 64/141 (45%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +3
Query: 354 AVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 533
++ + +LR+Q++ ++S F L I+QVGGREDSNVY+RMK +AA + GI+ EH+
Sbjct: 9 SLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANEAGISCEHV 68
Query: 534 RLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTI 713
P DITE +LL I NE P+VHGIIVQ+PL + I+ +T+AV+P+KDVDG
Sbjct: 69 NFPEDITEYDLLLAIKGFNEDPTVHGIIVQLPLPAH--INEQIITEAVAPEKDVDGFCET 126
Query: 714 NEGRVXVGDLSG-FIPCTPXG 773
N G++ + F CTP G
Sbjct: 127 NLGKLTKREGQPLFTACTPKG 147
>SPBC2G2.08 |ade9||C-1-
tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 969
Score = 114 bits (274), Expect = 2e-26
Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 1/141 (0%)
Frame = +3
Query: 369 IENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIRLPRD 548
++ + ++V L++K F+P LAIVQVG REDSNVY+RMK KAA +GI ++ P
Sbjct: 45 LQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLVGIDFKYCPFPET 104
Query: 549 ITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGRV 728
I LL ++ LN+ +VHG++VQ+PL ++ VT++++P KDVDG N G +
Sbjct: 105 IQMPALLHELKKLNDDHTVHGVLVQLPLPKH--LNERTVTESITPPKDVDGFGAFNIGLL 162
Query: 729 XVGDLSGF-IPCTPXGCVELI 788
D + PCTP G +EL+
Sbjct: 163 AKNDATPIHYPCTPKGIMELL 183
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 43.2 bits (97), Expect = 4e-05
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Frame = +3
Query: 357 VQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIR 536
V E+ L+Q V F P+L + +Y K +IG E
Sbjct: 21 VAETFVEQLKQHVNLFE-----FAPKLVGFLSNSDPAARMYADWTNKTCTEIGFQYELRE 75
Query: 537 LPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGL---- 704
+P+D +L I N PSV+GI++ P+ +D D + + VSPDKDV+GL
Sbjct: 76 VPKD----DLEDAIVEANNDPSVNGIMIYFPVFNDGQ-DQY-LQQVVSPDKDVEGLCHKY 129
Query: 705 --NTINEGRVXVGDLS--GFIPCTPXGCVELI 788
N + R + + +PCTP V+++
Sbjct: 130 VMNMYHNIRHLDPEKTKKSILPCTPLAIVKIL 161
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +3
Query: 417 SGFEPRLAIVQVGGRE-DSNVYIRMKLKAAEKI 512
SGFE R+ I++ E DSN+YIR+K + K+
Sbjct: 11 SGFENRIKILEDLMNEFDSNLYIRLKRECDFKL 43
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 632 KGHLNNDAVNRRRFIQTRYF 573
KG+LNN A N+ F + R+F
Sbjct: 365 KGYLNNPAANKSSFTKDRFF 384
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Frame = -3
Query: 677 DSISDSMSVDRVVRIKGHLNNDAVNR------RRFIQTRYFC*QLYFSDVPW*--ADMFG 522
D+ S + +VR++ N + V R + YFC + W A F
Sbjct: 701 DASSSAAFNASMVRLRSTFNEELVELFENMAVRSLNRAEYFCTGDFGEKTDWHHYALSFN 760
Query: 521 GDTNFLSCLQLHPDVDVRVLAPAHLHDGKPGLEAR 417
T+F S ++ +PD+ V L L + PG++ +
Sbjct: 761 HYTHFTSPIRRYPDIIVHRLLERSLKNTSPGIDKK 795
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +3
Query: 351 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRM--KLKAAEK 509
E ++ S++ D+RQ++ +L + S E I + RE IRM +L++AE+
Sbjct: 30 EEIESSLK-DVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRLESAEE 83
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 381 LRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHI 533
L + +T+LR+ + P A V G ED N+Y+ + + +H+
Sbjct: 223 LTKLITKLRTNSISWNPMEAFNFVAGSEDHNLYMYDMRNLKRALHVYKDHV 273
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +3
Query: 555 EIELLAKITSLNESPSVHGIIVQMPLD-SDHAIDAHRVTDAVSPDKDVDGLNTI 713
+I +L I +L E +++ + D ++ A RVT+ V DK+ DG+ T+
Sbjct: 249 KIVVLKHIFTLEELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTV 302
>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 477 YIRMKLKAAEKIGIAAEHIRLPRDITEIELLAKI 578
YI KL A G+A + I DI E+E+LAKI
Sbjct: 23 YISPKLYIASS-GVAGDGIFSTFDIDELEVLAKI 55
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 618 VQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEGRVXVG 737
++ P+D D+A H +T SP D D LN GR+ +G
Sbjct: 185 LEAPIDFDYASVHHNLTALSSP--DTDWLNAF-IGRIFLG 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,778
Number of Sequences: 5004
Number of extensions: 60604
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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