Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F20
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 119 2e-27
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 110 1e-24
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 105 4e-23
01_06_0124 - 26692731-26697046,26698749-26698827,26698899-266989... 31 1.0
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 30 1.8
09_02_0622 - 11310941-11311472,11312776-11312813,11312875-113129... 30 2.4
04_01_0039 + 455760-457631 29 3.2
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 9.7
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 28 9.7
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 119 bits (287), Expect = 2e-27
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Frame = +3
Query: 357 VQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIR 536
V + I ++ ++ +++ G P LA++ VG R+DS Y+R K KA E +GI + +
Sbjct: 88 VAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAVGIKSYEVN 146
Query: 537 LPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTIN 716
LP D +E E+L I + N PSVHGI+VQ+PL H ++ + +AVS +KDVDG + +N
Sbjct: 147 LPEDSSEDEVLKHIATFNSDPSVHGILVQLPL--PHHMNDENILNAVSIEKDVDGFHPLN 204
Query: 717 EGRVXV-GDLSGFIPCTPXGCVELI 788
GR+ + G F+PCTP GC+EL+
Sbjct: 205 IGRLAMQGRDPFFVPCTPKGCMELL 229
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 110 bits (265), Expect = 1e-24
Identities = 58/147 (39%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Frame = +3
Query: 351 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEH 530
+AV I ++ V L S + P LA+V VG R+DS Y++MK KA ++GI +
Sbjct: 8 KAVAADIRREVAADVAALSSAHN-LVPGLAVVIVGSRKDSQTYVQMKRKACAEVGIRSVD 66
Query: 531 IRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNT 710
+ L DI+E L+A++ LN P+VHGI+VQ+PL I+ ++ + +S +KDVDG +
Sbjct: 67 VDLAEDISEAALVAEVHRLNADPAVHGILVQLPLPKH--INEEKILNEISLEKDVDGFHP 124
Query: 711 INEGRVXV-GDLSGFIPCTPXGCVELI 788
+N G++ + G F+PCTP GC+EL+
Sbjct: 125 LNIGKLAMKGRDPLFLPCTPKGCMELL 151
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 105 bits (252), Expect = 4e-23
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 1/147 (0%)
Frame = +3
Query: 351 EAVQESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEH 530
++V E I + ++V ++++ G P LA+V VG R DS Y+R K+K E++GI +
Sbjct: 104 KSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEVGIKSLL 162
Query: 531 IRLPRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNT 710
LP + TE ++ ++ NE PSVHGI+VQ+PL +D R+ A+S +KDVDG +
Sbjct: 163 AELPGNCTEDVVVDSVSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHP 220
Query: 711 INEGRVXVGDLSG-FIPCTPXGCVELI 788
+N G + + F+PC C+EL+
Sbjct: 221 LNVGNLALRSRKPLFVPCAAKACLELL 247
>01_06_0124 -
26692731-26697046,26698749-26698827,26698899-26698955,
26699321-26699416
Length = 1515
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 315 RIRIMWKNSEELEAVQESIENDL 383
RI IM KN+E+LE V +++NDL
Sbjct: 496 RISIMHKNNEDLELVNSNLQNDL 518
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 306 KILRIRIMWKNSEELEAVQESIENDL 383
K +I +M KN+EELE +++N+L
Sbjct: 752 KFEQISVMQKNNEELELANSNLQNEL 777
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 258 SCSRNRRICIYCCIVIKILRIRIMWKNSEELEAVQESIENDL---RQQVTRLRSKWSG 422
+CS++ IC CC +K L R + + E + ++E+I R+ + RL +K G
Sbjct: 86 ACSKDLGICAKCCTCVKALVGRDLSEQESERKELEEAIRGARERERRTLLRLMNKGGG 143
>09_02_0622 -
11310941-11311472,11312776-11312813,11312875-11312926,
11313891-11314270
Length = 333
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 525 EHIRLPRDITEIELLAKITSLNESPSVHGIIV-QMPLDSDHA 647
+HIR+PRD+ + TS++ + +VH V Q+P ++ A
Sbjct: 192 DHIRVPRDVLRTAITTSATSVHLNITVHAASVGQLPPPTERA 233
>04_01_0039 + 455760-457631
Length = 623
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 576 ITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVS-PDKDVDGLNTINEGRVXVGDLSG 749
++ LNE P+++G +V + DSD ++ + DAV+ P +D + G LSG
Sbjct: 469 VSRLNEKPTINGTLVDITCDSDGKVEKF-IRDAVTLPLHPLDDAAAEHGGYYVAALLSG 526
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 369 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 458
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 116 LPAEICKINVLKYKTGMSMFIQMFKTSFVGLSNLAGRI 229
LP+ + K+ +L+Y S+ I F SF L NL I
Sbjct: 548 LPSSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALI 585
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,913,834
Number of Sequences: 37544
Number of extensions: 362160
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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