Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F20
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging ...   131   5e-31
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    28   6.6  

>U41552-3|AAC69100.2|  303|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 3 protein.
          Length = 303

 Score =  131 bits (317), Expect = 5e-31
 Identities = 67/143 (46%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +3

Query: 363 ESIENDLRQQVTRLRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKAAEKIGIAAEHIRLP 542
           + + +D+ Q++ + R     F   LAIVQVG R DSNVYI  KLK A++IG   + I+LP
Sbjct: 13  KKVLHDVGQKIAKTREHHPNFHAVLAIVQVGNRSDSNVYINSKLKKAKEIGADGKLIKLP 72

Query: 543 RDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNTINEG 722
             IT+ +L  +I +LN    + GII+Q+PLD  H IDA  V D + P KDVDGL  IN G
Sbjct: 73  DTITQGDLKREIMALNHDNEIDGIIIQLPLDCKHEIDADSVIDLIDPLKDVDGLTRINAG 132

Query: 723 RVXVGDLSGFI-PCTPXGCVELI 788
           R+  G+L   I PCTP GC+ L+
Sbjct: 133 RLARGELQRTIFPCTPFGCLYLV 155


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 228  FVCSAF*CKISCSRNRRICIYCCIVIKILRIRIMWKNSEELEAVQE 365
            F+ +   C I+    RR C  CC     LR R+ +K  E   AVQE
Sbjct: 1069 FLFTLLLCCITMKPIRRACFLCCHRRSRLRQRMKYKGLESCRAVQE 1114


>U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical
           protein B0507.4 protein.
          Length = 211

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 318 IRIMWKNSEELEAVQESIENDLRQQVTRLRSKWSGFE 428
           IR+ ++  E+     + IEN LRQ + R+++K+  FE
Sbjct: 24  IRLKYRFEEKAHEWSDWIENHLRQMIIRVQTKFIDFE 60


>AL031632-2|CAA21005.2|  789|Caenorhabditis elegans Hypothetical
           protein Y32B12B.2 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 540 PRDITEIELLAKITSLNESPSVHGIIVQMPLDSDHAIDAHRVTDAVSPDKDVDGLNT 710
           PRD+TE+E    I+ L E  ++ G+ V++  D D  +D     D    D++ D  NT
Sbjct: 581 PRDLTELEEELGISILEE--TLDGMNVELLDDDDWIVDDDNDEDGECIDEEEDYDNT 635


>Z69385-3|CAA93426.2| 1477|Caenorhabditis elegans Hypothetical
           protein ZK593.4 protein.
          Length = 1477

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 196 FCWFVKPSWTYS-SAVHFSVK*VAHGTG 276
           FCW  +  WTYS +  HF  + + +G G
Sbjct: 511 FCWHTEDHWTYSVNYNHFGERKIWYGVG 538


>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = -3

Query: 734 YXYSTFVNCV*AVNIFIRRDSISDSMSVDRVV-RIKGHL-NNDAVNRRRFIQTRYF 573
           Y  +T+ +   +V IF+   ++  S     V+ R K HL +ND   RRR ++ R+F
Sbjct: 169 YIITTYTDYYTSVAIFVVMSTLDFSTFTMLVLYRRKSHLTSNDETRRRRRVEIRFF 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,552
Number of Sequences: 27780
Number of extensions: 336843
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)