Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F20
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   4.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.7  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   7.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   7.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.5  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 469 ESSRPPTCTMASLGSKPDHFER 404
           +SS  P    +S  + PDH+ER
Sbjct: 27  DSSGIPHSAESSASNSPDHYER 48


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 392 LLTQVIFYRFLH---SFQFFRILPHNPDS*YLYHDTTVNTN 279
           +LT  + +  LH   S    +I   NPD+  LY D   N N
Sbjct: 6   ILTLGVLFNTLHIIYSVAGLKIFEANPDTKRLYDDLLSNYN 46


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 FVKPSWTYSSAVHFSVK*VAHGTGEF 282
           F+K   T +S    +V  VA GTGEF
Sbjct: 25  FIKNMITGTSQADCAVLIVAAGTGEF 50


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 FVKPSWTYSSAVHFSVK*VAHGTGEF 282
           F+K   T +S    +V  VA GTGEF
Sbjct: 41  FIKNMITGTSQADCAVLIVAAGTGEF 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 330 WKNSEELEAVQESIENDLRQQVTR-LRSKWSGFEPRLAIVQVGGREDSNVYIRMKLKA 500
           W+N   +  + E    DLR Q  R L +   G   R+ +VQ+ G    +  ++   KA
Sbjct: 346 WENRATIPELNEEFR-DLRLQDLRPLATLGVGGFGRVELVQIAGDSSRSFALKQMKKA 402


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 205 FVKPSWTYSSAVHFSVK*VAHGTGEF 282
           F+K   T +S    +V  VA GTGEF
Sbjct: 98  FIKNMITGTSQADCAVLIVAAGTGEF 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,299
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)