Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F19
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 57 3e-09
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 49 8e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 46 6e-06
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 41 2e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 40 3e-04
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 40 3e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 39 9e-04
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 38 0.002
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 36 0.005
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.006
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 36 0.006
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 34 0.019
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.019
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 34 0.026
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 33 0.045
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.059
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 31 0.14
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 30 0.42
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 29 0.55
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 29 0.96
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 28 1.3
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 1.3
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 28 1.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 1.3
SPBC8D2.09c |||U2 snRNP-associated protein Msl1 |Schizosaccharom... 28 1.3
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 5.1
SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A |Schi... 26 6.8
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.0
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 9.0
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 56.8 bits (131), Expect = 3e-09
Identities = 27/69 (39%), Positives = 42/69 (60%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
I + LT NVT++HI EIF YG + I P+ + N +GY Y+E+ D+A NA+
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELN-KGYCYIEYVYHDQAANAVDK 159
Query: 740 MDGGQIDGQ 766
M+ ++DG+
Sbjct: 160 MNNAELDGE 168
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 48.8 bits (111), Expect = 8e-07
Identities = 19/70 (27%), Positives = 40/70 (57%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 736
R+ + LT + D + +F +G ++ + P+D+ +N +G+AY++F++AD+A A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK-KTNNPKGFAYIDFHDADDAVRAYL 382
Query: 737 HMDGGQIDGQ 766
+D G+
Sbjct: 383 ELDAKPFQGR 392
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
T+I I L T+ + + YG ++S+ P + + RG+A+ EF A EA NAM
Sbjct: 721 TKILIKNLPFEATKKDVQSLLGAYGQLRSVRVP--KKFDRSARGFAFAEFVTAREAANAM 778
Query: 734 KHMDGGQIDGQ 766
+ + + G+
Sbjct: 779 RALKNTHLLGR 789
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 683 GYAYVEFNNADEAXNAMKHMDGGQIDG 763
G+ +VEF + A AM M+G +DG
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDG 692
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 46.0 bits (104), Expect = 6e-06
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHN---GRGYAYVEFNNADEAXN 727
R+ +GRL+ + + I +F T GTV+ + P R+ G A+V FNN ++
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 728 AMKHMDGGQID 760
A++ ++G +D
Sbjct: 105 AIETLNGKTLD 115
Score = 33.5 bits (73), Expect = 0.034
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYG------TVKSIE-FPMDRL----HPHNGRGYAYVEFN 706
I++ L++ +T + + E+F Y V+S+ + + R+ GRG+ +V F
Sbjct: 207 IYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSFA 266
Query: 707 NADEAXNAMKHMDGGQI 757
NA++ A++ M+G Q+
Sbjct: 267 NAEDQSRAIEEMNGKQV 283
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 40.7 bits (91), Expect = 2e-04
Identities = 21/69 (30%), Positives = 37/69 (53%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+++G L +VT + E+F++ G V SI D + GYAYV F+N ++ A+
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAV-TRRSLGYAYVNFHNMEDGEKALDE 140
Query: 740 MDGGQIDGQ 766
++ I G+
Sbjct: 141 LNYTLIKGR 149
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 736
R+ + + N+T + + IF +G ++ + D + +G+ Y+++ N A NA++
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD--DQNRSKGFGYIQYRNPISARNALE 398
Query: 737 HMDGGQIDGQ 766
M+G + G+
Sbjct: 399 KMNGFDLAGR 408
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/62 (30%), Positives = 35/62 (56%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+H+G L +VT ++ F +G + S+ + R R YA+VEF+ ++A AM++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVA--LHRKEKAVDRSYAFVEFDEPEDAKEAMEN 65
Query: 740 MD 745
M+
Sbjct: 66 MN 67
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 38.7 bits (86), Expect = 9e-04
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+ +GRL+ NV + + F YGT+ MD +GY YV+F + A A+
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDG-QSGRSKGYGYVDFETPEAAKAAVAA 323
Query: 740 MDGGQIDGQ 766
+IDG+
Sbjct: 324 NGTKEIDGR 332
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/64 (26%), Positives = 34/64 (53%)
Frame = +2
Query: 557 RIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 736
+I+I L LN+ D + E+ +G + S + + + + +G+ + EF N +A A+
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQL-IKNIADGSSKGFCFCEFKNPSDAEVAIS 369
Query: 737 HMDG 748
+DG
Sbjct: 370 GLDG 373
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+++G L+ T + I+ +FS G ++ I +DR G+ +VE+ +A +++K+
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRF-TKTPCGFCFVEYFENQDALDSLKY 92
Query: 740 MDGGQID 760
+ +D
Sbjct: 93 ISRTSLD 99
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/58 (25%), Positives = 32/58 (55%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
+++G + +VT + + F++ G+V + D+ H +G+AY+EF+ NA+
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHP-KGFAYIEFSEPSLVPNAL 113
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 602 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 736
I ++FS YG V + FP L + R + YV+ DEA NA++
Sbjct: 682 ITKLFSAYGNVVDVRFPS--LRYNTNRRFCYVQMRKPDEAHNALQ 724
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 34.3 bits (75), Expect = 0.019
Identities = 14/69 (20%), Positives = 36/69 (52%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+ + + + D + +IFS +GTV + + + RG+ ++ F+ +EA +A+ +
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPV-TKASRGFGFLSFSTVEEATSAIDN 161
Query: 740 MDGGQIDGQ 766
++ + G+
Sbjct: 162 LNSQEFYGR 170
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 34.3 bits (75), Expect = 0.019
Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNG--RGYAYVEFNNADEAXNAM 733
+++G + + + + +IF G VKS + +D P +G +GY + E+++ A +A+
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVID---PESGQPKGYGFCEYHDPATAASAV 63
Query: 734 KHMD 745
++++
Sbjct: 64 RNLN 67
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 33.9 bits (74), Expect = 0.026
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 563 HIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
H+G L+ ++T + + + F V SI +D L RG+ YVEF AD A+
Sbjct: 97 HVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPL-TERSRGFGYVEFETADTLSAAL 150
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 33.1 bits (72), Expect = 0.045
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
T + +G L VT I ++++T G ++ +R N GY +VEF + EA +AM
Sbjct: 93 TTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNA-GYCFVEFASPHEASSAM 151
Query: 734 KHMDGGQIDG 763
M+ I G
Sbjct: 152 S-MNNKPIPG 160
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/63 (22%), Positives = 30/63 (47%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+ +G L+ V+ + + +F +G + ++ P G+G +V+F N A A+
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPP-------GKGCGFVQFVNRQSAEIAINQ 357
Query: 740 MDG 748
+ G
Sbjct: 358 LQG 360
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 32.7 bits (71), Expect = 0.059
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +2
Query: 557 RIHIGRLTLNVTR-DHIHEIFSTYGTVKSIEFPMDRLHPHNGR--GYAYVEFNNADEAXN 727
R+ I L ++ + H+ FS +G V+ I+ P GR G+A+V + A
Sbjct: 108 RLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKG----GGRMCGFAFVWMKDRKAAEE 163
Query: 728 AMKHMDGGQIDGQ 766
AM ++G +IDG+
Sbjct: 164 AMNSLNGTEIDGR 176
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.14
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIE-------FPMDRLHPH----NGRGYAYVEFN 706
I++G + ++ + I + FS YG V+SI +P ++ P NG Y +V+F
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQYGFVKFV 78
Query: 707 NADEAXNAMKHMDG 748
NA+ +K G
Sbjct: 79 NAESIEEVLKDAKG 92
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 29.9 bits (64), Expect = 0.42
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
+++ L + + IH +FS YG VK I L P N +Y ++A A +A+
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWM----LSPDNSAIVSYESLSSAIVARDAL 55
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 29.5 bits (63), Expect = 0.55
Identities = 12/63 (19%), Positives = 31/63 (49%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
+ + L+ + + + ++F +G ++ + D+ +G+A+V + + D A A
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDK-ETGRAKGFAFVSYYDRDCAIKARDR 262
Query: 740 MDG 748
+DG
Sbjct: 263 LDG 265
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 28.7 bits (61), Expect = 0.96
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
I+IG L ++ D I +FS +G I D+ +G+A++++ + A+ +
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDK-ETGKSKGFAFLKYEDQRSTVLAVDN 91
Query: 740 M 742
M
Sbjct: 92 M 92
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +2
Query: 431 SPTGDKKKSVLPLSNDKAKIKEKQ 502
SP+ D KK L L ND +IKEK+
Sbjct: 562 SPSIDMKKESLELKNDTTEIKEKK 585
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 587 VTRDHIHE-IFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKHMDGGQID 760
VT+D E IFS +G + S + D+ + YA++EF+N + A M ID
Sbjct: 254 VTQDEDLELIFSRFGKIISCQVIRDK-ETGDSLQYAFIEFDNKESVEKAYFKMQNVLID 311
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 602 IHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKHMDGGQIDGQ 766
+ + F +G + ++ D L R Y++V+F N D+A A+ +DG+
Sbjct: 99 VKDYFQQWGPLLHVKVLKDWLQ----RPYSFVQFQNTDDASKALSEAQNTILDGR 149
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.3 bits (60), Expect = 1.3
Identities = 16/70 (22%), Positives = 31/70 (44%)
Frame = +2
Query: 554 TRIHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAM 733
TR+ +GR+ TR+ + + F YG + + G+ +VE +A +A + +
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKLM---------NGFGFVEVEDARDARDIV 54
Query: 734 KHMDGGQIDG 763
G + G
Sbjct: 55 NDFQGKEFMG 64
>SPBC8D2.09c |||U2 snRNP-associated protein Msl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 572 RLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMK 736
++ N R ++ +FSTYGTV I L RG A+V F + A AMK
Sbjct: 14 KINKNDLRTALYMLFSTYGTVVDIV----ALKTPKMRGQAHVVFFDPSAAAIAMK 64
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 560 IHIGRLTLNVTRDHIHEIFSTYGTVKSIEFPMDRLHPHNGRGYAYVEFNNADEAXNAMKH 739
I++G L + + + + +FST K + F P +VEF N A A+K+
Sbjct: 428 IYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGP-----MCFVEFENIPYAMEALKN 482
Query: 740 MDG 748
+ G
Sbjct: 483 LQG 485
>SPAC8E11.07c |alp31||tubulin specific chaperone cofactor A
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 423 EIDHQQETKKNLCYLYQMTKLKLRKNRNDLQDVRSENAHHHHDQL 557
EI+HQ+ K ++LR NDL+ + S++A+ +L
Sbjct: 48 EIEHQKFVLKKHLEALPDALVRLRNATNDLESISSDSAYEGTPEL 92
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 389 KDRRDADREKIRDRSPTGDKKKSVLPLSNDK 481
K RR A+REK+R G K K L + K
Sbjct: 479 KARRRAEREKLRSEGLLGKKSKKKLLRESQK 509
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 608 EIFSTYGTVKSIEFPMDRL-HPHNGRGYAYVEFNNADEAXNAMKHMDGGQIDGQ 766
E F YG + I + NG Y+ + ++A A+ +DG DG+
Sbjct: 140 EYFGQYGKIIKIAINKKAAANSANGHVGVYITYQRKEDAARAIAAIDGSVSDGR 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,449
Number of Sequences: 5004
Number of extensions: 42643
Number of successful extensions: 173
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -