Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F18
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   5.6  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   5.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   5.6  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   7.3  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   7.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    24   9.7  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1237

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 297  PIFTKNMARKPPAPHHYRVQHQWLPMVK 214
            P+  K + RKP +P    + ++WL  +K
Sbjct: 1062 PVSVKPINRKPLSPAQMAIVYRWLQFLK 1089


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 349 YRCTVCDGTFNTKKQMEAHIYKEHGAEAP 263
           YRCT C   F+    ++ H Y  H  E P
Sbjct: 468 YRCTECLQGFSRPSSLKIHTY-SHTGERP 495


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -3

Query: 317 YKKTNGSPYLQRTWRGSPPHRTITEYNTNGCRW 219
           YK +NG  Y+  T  G+  +R    Y     +W
Sbjct: 883 YKASNGDLYVNHTGAGADKYRFSLNYGGTYSKW 915


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 302 GSPYLQRTWRGSPPH 258
           GSPYL   W+ + PH
Sbjct: 190 GSPYLWTRWQSNDPH 204


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 358 ERCYRCTV--CDGTFNTKKQMEAHIYKEHGAEAPRTAPLQSTTP 233
           ++ Y+C V  CD  +  +  ++ H  K HG  +P T P  +  P
Sbjct: 347 DKPYKCPVPNCDKAYKNQNGLKYH--KLHGHCSPITTPTPAPIP 388


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 8/19 (42%), Positives = 13/19 (68%), Gaps = 4/19 (21%)
 Frame = +2

Query: 197 NQVTHHF----TIGSHWCC 241
           +++ HHF     IG++WCC
Sbjct: 470 HRIPHHFESHTNIGANWCC 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,340,242
Number of Sequences: 5004
Number of extensions: 21724
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)