Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F18
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242...    33   0.084
06_03_1478 - 30420097-30420651                                         31   0.34 
07_03_1680 + 28620244-28620480,28620556-28620732,28620819-286209...    29   1.8  
02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393           29   1.8  
09_02_0366 + 7941550-7942161,7942230-7942775                           28   4.2  
06_03_0743 + 24069752-24070483,24071890-24072345                       27   5.5  
07_03_1681 + 28624899-28625075,28625224-28625400,28625508-286256...    27   7.3  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     27   9.6  
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721...    27   9.6  

>02_05_0473 +
           29319824-29322511,29322659-29322820,29324133-29324249,
           29324360-29324469,29324504-29324540,29324696-29324862,
           29325002-29325089,29325163-29325270
          Length = 1158

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 355 RCYRCTVCDGTFNTKKQMEAHIYKEHGAE 269
           R Y C VC  +F  ++ +E H+ ++HGA+
Sbjct: 495 RGYSCAVCMDSFTNRRVLERHVQEKHGAQ 523


>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
 Frame = -1

Query: 349 YRCTVCDGTFNTKKQMEAHIYKE-----HGAEAPRTAPLQSTTPMAADGK---VMCDLVE 194
           Y C +CD  F T+K +  H+         G E PR  P      +AADGK    +CD  +
Sbjct: 56  YPCPLCDRHFPTEKAVHGHMRSHPGRGWRGMEPPR-EPSPGDLALAADGKRYRYVCDRCK 114

Query: 193 AALQ 182
           A  +
Sbjct: 115 APFE 118


>07_03_1680 +
           28620244-28620480,28620556-28620732,28620819-28620984,
           28621099-28621493
          Length = 324

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -1

Query: 358 ERCYRCTVCDGTFNTKKQMEAHIYKEHGAEAPRTAPLQSTTPMAADGKVMCDLV 197
           +R Y  T  D  F T++Q  A+  +  G+     APL +TTP A D     +L+
Sbjct: 208 DRIYNETNIDSAFATQRQ--ANCPRPTGSGDSNLAPLDTTTPNAFDNAYYSNLL 259


>02_01_0719 - 5364430-5364440,5364635-5365055,5365857-5366393
          Length = 322

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 361 GERCYRCTVCDGTFNTKKQMEAHIYKEHGAEAPR--TAPLQSTTPMA 227
           G   + C VC  TFN    ++ H++  HG++  R  TA L+   P A
Sbjct: 159 GATQFSCPVCRKTFNRYNNLQMHMW-GHGSQYRRGGTAALRGAQPTA 204


>09_02_0366 + 7941550-7942161,7942230-7942775
          Length = 385

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 361 GERCYRCTVCDGTFNTKKQMEAHIYKEHGAE 269
           G   + C VC+ TFN    M+ H++  HG++
Sbjct: 184 GSTQFSCAVCNKTFNRFNNMQMHMW-GHGSQ 213


>06_03_0743 + 24069752-24070483,24071890-24072345
          Length = 395

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 361 GERCYRCTVCDGTFNTKKQMEAHIYKEHGAEAPRTAP--LQSTTPMA 227
           G   + C VC  TFN    M+ H++  HG++  R  P  L+ T P A
Sbjct: 224 GPTQFSCPVCYKTFNRYNNMQMHMW-GHGSQY-RKGPESLRGTQPTA 268


>07_03_1681 +
           28624899-28625075,28625224-28625400,28625508-28625673,
           28625761-28626152
          Length = 303

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -1

Query: 358 ERCYRCTVCDGTFNTKKQMEAHIYKEHGAEAPRTAPLQSTTPMAADGKVMCDLV 197
           +R Y  T  D +F T   ++A+  +  G+     APL +TTP A D     +L+
Sbjct: 188 DRLYNETNIDSSFATA--LKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLL 239


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 363 LASAVIVALYATVHLIQKNKWKPIF-TKNMARKPPAPHHYRVQHQ 232
           L +A   A  A + L+  +K KP+  T  M     +PHH R +HQ
Sbjct: 162 LVAAQHRARAARLRLLDDDKEKPLLHTPRMMPTRRSPHHPRFRHQ 206


>01_05_0429 +
           22070636-22070662,22071490-22071577,22071908-22072168,
           22072925-22073161,22073251-22073375,22074093-22074569,
           22074655-22075569
          Length = 709

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 286 KEHGAEAPRTAPLQSTTPMAADGKVMCDLVEAALQQ 179
           +EH  EAPR  P   ++P A+          AA +Q
Sbjct: 661 QEHAVEAPRKTPAAPSSPAASAAAAAAATAAAAAKQ 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,429,917
Number of Sequences: 37544
Number of extensions: 161017
Number of successful extensions: 575
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)