Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F17
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    26   4.2  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   7.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    25   9.7  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 580 VLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLL 485
           +L +++ +ML  +LR+  +G  NHT ++KCLL
Sbjct: 418 ILWLWLFRML--NLRIASMG-NNHTLLEKCLL 446


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 504 TWTSAFCAAFFWSVALCPCCFFILD 430
           TW +AF   F  +  L  C F ILD
Sbjct: 442 TWRNAFFDEFIGTAVLVGCLFAILD 466


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 565 VLKMLFVSLRVRHLGLTNHTNMDKC 491
           ++++LF S++ R LG+  H+    C
Sbjct: 146 LVRLLFPSIKTRRLGMRGHSKYHYC 170


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -2

Query: 260 SLITKKLT*NNSNFDVNKETNRGQ 189
           S IT KL  NNSN  V    NRG+
Sbjct: 123 SSITSKLQ-NNSNLSVTSSANRGR 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,143
Number of Sequences: 5004
Number of extensions: 50531
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)