Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F17
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)          47   1e-05
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    31   1.1  

>SB_57972| Best HMM Match : Phage_integrase (HMM E-Value=0.85)
          Length = 264

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/51 (47%), Positives = 27/51 (52%)
 Frame = +2

Query: 368 QYTMARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCK 520
           + TMARGHQKI                 GH   DQKKAA KAL++ C VCK
Sbjct: 186 EVTMARGHQKIQSQQKNAEKKKKMEKAQGH---DQKKAASKALIYTCTVCK 233


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/54 (22%), Positives = 35/54 (64%)
 Frame = -3

Query: 637 IQI*MILIVLDILQVIW*IVLRVFVLKMLFVSLRVRHLGLTNHTNMDKCLLCSF 476
           I I +I++++ ++ +I  +++ ++V  ++F ++ +  + +T H ++  CLLC +
Sbjct: 239 IIIIIIIVIISMITIIISLIIIIYVTHIIF-NIIIIVINVTLHRSVSYCLLCDY 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,817,249
Number of Sequences: 59808
Number of extensions: 359774
Number of successful extensions: 755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)