Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F17
(663 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical pr... 77 1e-14
AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein. 77 1e-14
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 34 0.078
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 34 0.078
U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical p... 30 1.3
U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical pr... 30 1.3
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 29 2.9
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 29 2.9
Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc ... 29 3.9
AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like p... 29 3.9
AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolo... 29 3.9
Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical pr... 28 5.1
AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical... 28 6.8
AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z68213-4|CAA92441.1| 73|Caenorhabditis elegans Hypothetical
protein C01F6.9 protein.
Length = 73
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +2
Query: 377 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 556
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 557 FENKHPKNDLPDDL 598
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>AF202929-1|AAK69379.1| 73|Caenorhabditis elegans Nx protein.
Length = 73
Score = 77.0 bits (181), Expect = 1e-14
Identities = 40/74 (54%), Positives = 43/74 (58%)
Frame = +2
Query: 377 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVCKAQMPDPKTYKQH 556
MARG QKI + DQK AA KAL H C VC A MPDPKTYKQH
Sbjct: 1 MARGQQKIQSQQKNQKKADAARK----AGIDQKAAAAKALNHKCTVCLAMMPDPKTYKQH 56
Query: 557 FENKHPKNDLPDDL 598
FENKHPK+ LP +L
Sbjct: 57 FENKHPKSPLPAEL 70
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.078
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.10
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.96
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 34.3 bits (75), Expect = 0.078
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
HVCV+C QMP T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359
Score = 33.9 bits (74), Expect = 0.10
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
H+C++C ++P+ +T ++H +NKH
Sbjct: 39 HMCLLCNRRIPENETLREHMKNKH 62
Score = 30.7 bits (66), Expect = 0.96
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKH 571
H C++C Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229
>U49941-10|AAB53870.1| 73|Caenorhabditis elegans Hypothetical
protein K10B3.1a protein.
Length = 73
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 377 MARGHQKIXXXXXXXXXXXXXXXXXGHSATDQKKAAQKALVHVCVVC 517
MARGHQK G +DQK AA +L H C VC
Sbjct: 1 MARGHQKALSQQRNAEKTAKAKKAVG---SDQKNAAMASLHHKCTVC 44
>U22832-3|AAA64508.2| 359|Caenorhabditis elegans Hypothetical
protein C09F5.3 protein.
Length = 359
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +2
Query: 500 HVCVVCKAQMPDPKTYKQHFENKHPK 577
H+C +C + P P+ HF H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 373 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 498
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 759 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 800
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +1
Query: 373 HNGSRTPENSVTS*SCGKDVQNEETAGAQCHRPEESCTKG-TC 498
H+G +PE + + GK ++E T +P ESCT+G TC
Sbjct: 856 HDGCVSPEEAARRKARGK-ARHEATTARLYSKPGESCTQGQTC 897
>Z77667-6|CAB01235.2| 870|Caenorhabditis elegans Hypothetical
protein M04B2.1 protein.
Length = 870
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 461 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 583
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF416567-1|AAL27004.1| 870|Caenorhabditis elegans nuclear zinc
finger protein protein.
Length = 870
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 461 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 583
A Q K +++ C VC + +T + H + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853
>AF300704-1|AAG24400.1| 622|Caenorhabditis elegans incenp-like
protein ICP-1 protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 470 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 595
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>AC025716-5|AAK39616.1| 622|Caenorhabditis elegans Incenp homolog
protein 1 protein.
Length = 622
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +2
Query: 470 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 595
+K+A Q+AL +M P+TY+ + +N + NDL D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534
>Z92786-1|CAB07203.1| 250|Caenorhabditis elegans Hypothetical
protein F47H4.1 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.1
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 455 HSAT-DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKH 571
HSA+ ++ + + H C++C+ + +T ++H N+H
Sbjct: 36 HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75
>AL132948-46|CAD31837.2| 473|Caenorhabditis elegans Hypothetical
protein Y39B6A.27 protein.
Length = 473
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -1
Query: 570 CLFSKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFF 439
C S CC+ + S I AL + +F A + C CFF
Sbjct: 368 CGMSDCCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411
>AL023847-8|CAI46616.1| 262|Caenorhabditis elegans Hypothetical
protein Y57A10C.11 protein.
Length = 262
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = -1
Query: 555 CCL*VLGSG-IWALQTTQTWTSAFCAAFFWSVALCPCCFFILDI 427
CCL +GSG +W + + W F+W L P L+I
Sbjct: 55 CCL--VGSGWMWVVDNKRKWYIRSIRRFYWHRILMPTAVVCLNI 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,376,175
Number of Sequences: 27780
Number of extensions: 286498
Number of successful extensions: 771
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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