Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F16
         (792 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53877| Best HMM Match : Glyoxalase (HMM E-Value=0.58)               85   8e-17
SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  28   7.5  
SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)                   28   10.0 
SB_30158| Best HMM Match : Pertactin (HMM E-Value=3.1)                 28   10.0 

>SB_53877| Best HMM Match : Glyoxalase (HMM E-Value=0.58)
          Length = 220

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 38/70 (54%), Positives = 51/70 (72%)
 Frame = +3

Query: 582 DPIVKVSLASSNLAKSIAYWNGLLTLKLYEKTDKTALLGYSDDQAKLELVDIGGPINRAR 761
           DP+ KVSL  SNL+KS+ YWN LL ++++ +TD TA+LGY   Q KLELV + G ++   
Sbjct: 111 DPVKKVSLGVSNLSKSLEYWNKLLGMQVFSQTDTTAILGYDAKQCKLELVQV-GQVDHGT 169

Query: 762 AYGRIXFSCP 791
           A+GRI FSCP
Sbjct: 170 AFGRIAFSCP 179



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/32 (84%), Positives = 28/32 (87%)
 Frame = +3

Query: 177 MVSGRALHFVFKVADRTLTAKFYREILGMKVL 272
           M S RALHFVFKVA+RT TAKFYREILGMK L
Sbjct: 1   MASKRALHFVFKVANRTETAKFYREILGMKGL 32



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
 Frame = +3

Query: 438 GITVQSSESLKRAQTNNWPIKEH-NGLKYVEAPGGYKFYIVDKPQPVDKDPIVKVSLASS 614
           G+T+ S + + RA+ +N+ +++  NG   V +PGGYKF++ D+        I+      +
Sbjct: 31  GLTLHSKDVVSRAKEHNYSMEQGTNGHYTVHSPGGYKFHLADEEASGGPLEILFQKKGHN 90

Query: 615 NLAKSI--AYWNGLLTLKLYEKTDKTALLGYSDDQAKLE 725
           N   +I    W   +T+   +   K + LG S+    LE
Sbjct: 91  NKEINIEDTLWRSTVTVICLDPVKKVS-LGVSNLSKSLE 128


>SB_20498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 387 VQQQNVYLQGHIQP--WFCSIGLHKVHCKLPHILH*TLHGGEPSFRGF 250
           +Q  NV  +G I     FC + +HKVH  + H  H T++G   + R F
Sbjct: 8   MQVMNVQAKGGIALVYLFCRLPVHKVHLGVDHRKHVTVYGTRAACRAF 55


>SB_12899| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +3

Query: 270 LRHEEFSEGCEAACNGPYANRWSKTMVGYGPEDTHFVVELTYNYGVTHYEQGNDFLG 440
           LRH  + +      N      W KT       D   +++ TY++ V H+ +  DFLG
Sbjct: 518 LRHISYDQARRRIMNWDVRMEWDKTF------DDVIILDRTYHFNVIHWYKACDFLG 568


>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2408

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +3

Query: 363  EDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAP 533
            ED    VE  Y    + +E G D L   VQ S S++  +  + P  EH+      +P
Sbjct: 2278 EDEEAFVERKYTPRKSSFEDGQDKLRDNVQYSSSVRIPKRESSPTPEHSSRYLTPSP 2334


>SB_47844| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 663 LYEK-TDKTALLGYSDDQAKLELVDIGGPINRARAYGR 773
           +YEK TD     GY+ D  +++ V +  P  R  AY R
Sbjct: 1   MYEKKTDIETRQGYNKDTTRIQAVSVSNPSPRTAAYFR 38


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = +3

Query: 459  ESLKRAQTNNWPIKEHNGLKYVEAPGGYKFYIVDKPQPVDKDPIVKVSLASSNL 620
            + LK+ +T++   +E +   Y+    GY  + VD P+P        +   S +L
Sbjct: 1379 QRLKQGRTSSRRSRESSSSNYLSHDDGYSGFRVDSPRPTSPTNTADIDSGSQSL 1432


>SB_14324| Best HMM Match : Ank (HMM E-Value=1.7e-28)
          Length = 631

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 61  KFIIIHRLNNHTKYIHSLSLHRSLNSE 141
           + I IH LNN T Y H   L R +N E
Sbjct: 193 QLIAIHALNNTTIYEHRSKLSRIINEE 219


>SB_30158| Best HMM Match : Pertactin (HMM E-Value=3.1)
          Length = 426

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 275 AENLHSEDFPIKFCC*SPICDFKY 204
           AEN H+E   +K CC S  CDF Y
Sbjct: 32  AENGHAE--VVKMCCESGACDFVY 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,038,716
Number of Sequences: 59808
Number of extensions: 451450
Number of successful extensions: 982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)