Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F16
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical p... 182 3e-46
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 31 0.94
AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine re... 31 1.2
AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine re... 31 1.2
AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of ... 29 5.0
AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of ... 29 5.0
AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of ... 29 5.0
U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical pr... 28 6.7
U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical pr... 28 6.7
U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical pr... 28 8.8
>Z46787-13|CAA86748.1| 281|Caenorhabditis elegans Hypothetical
protein C16C10.10 protein.
Length = 281
Score = 182 bits (442), Expect = 3e-46
Identities = 90/205 (43%), Positives = 124/205 (60%), Gaps = 1/205 (0%)
Frame = +3
Query: 180 VSGRALHFVFKVADRTLTAKFYREILGMKVLRHEEFSEGCEAACNGPYANRWSKTMVGYG 359
++ RALH+VFKVA+R T F+ +L MKVLRHEEF +GCEA CNGPY RWSKTM+GYG
Sbjct: 1 MTARALHYVFKVANRAKTIDFFTNVLNMKVLRHEEFEKGCEATCNGPYNGRWSKTMIGYG 60
Query: 360 PEDTHFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTNNWPIKEHNGLKYVEAPGG 539
ED HFV+E+TYNY + YE GND+ I + S + ++ + N K G V+ P G
Sbjct: 61 SEDEHFVLEITYNYPIHKYELGNDYRAIVIDSDQLFEKVEKINHR-KSGCGRLAVKDPDG 119
Query: 540 YKFYIVDKPQPVDKDP-IVKVSLASSNLAKSIAYWNGLLTLKLYEKTDKTALLGYSDDQA 716
++F K D+ P +++V + +L KS YWN L + + E+ + Y D Q
Sbjct: 120 HEF----KIGKADQSPKVLRVQVNVGDLEKSKKYWNETLGMPIVEEKSSRIRMSYGDGQC 175
Query: 717 KLELVDIGGPINRARAYGRIXFSCP 791
+LE+V I+R +GRI FS P
Sbjct: 176 ELEIVKSQDKIDRKTGFGRIAFSYP 200
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 372 HFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTN 485
H +++L +N H + GND++ +SSE ++A N
Sbjct: 1414 HKIIDLHFNIPKDHEDYGNDYVPFGTESSEESQKADGN 1451
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 372 HFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTN 485
H +++L +N H + GND++ +SSE ++A N
Sbjct: 1414 HKIIDLHFNIPKDHEDYGNDYVPFGTESSEESQKADGN 1451
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 31.1 bits (67), Expect = 0.94
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +3
Query: 372 HFVVELTYNYGVTHYEQGNDFLGITVQSSESLKRAQTN 485
H +++L +N H + GND++ +SSE ++A N
Sbjct: 1414 HKIIDLHFNIPKDHEDYGNDYVPFGTESSEESQKADGN 1451
>AC024779-2|AAK68485.1| 299|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform a protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 332 SVCIRSIASCLTSFTKLFMAENL----HSEDFPIKFCC*SPICDFKYEMKSTTANHFAI* 165
++ IR + S SF +L ++++ HS F F SP+C F E+ T ++ F
Sbjct: 7 ALLIRRLPSLKNSFGRLTASQSIGDAIHSTVFAFIF---SPMCFFSVEIMKTYSSAFGHI 63
Query: 164 QL*AYDFSSELSDLC 120
L AYD S+ S LC
Sbjct: 64 LLIAYDIST-YSHLC 77
>AC024779-1|AAP86615.1| 304|Caenorhabditis elegans Serpentine
receptor, class x protein50, isoform b protein.
Length = 304
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Frame = -2
Query: 332 SVCIRSIASCLTSFTKLFMAENL----HSEDFPIKFCC*SPICDFKYEMKSTTANHFAI* 165
++ IR + S SF +L ++++ HS F F SP+C F E+ T ++ F
Sbjct: 18 ALLIRRLPSLKNSFGRLTASQSIGDAIHSTVFAFIF---SPMCFFSVEIMKTYSSAFGHI 74
Query: 164 QL*AYDFSSELSDLC 120
L AYD S+ S LC
Sbjct: 75 LLIAYDIST-YSHLC 88
>AC006833-12|AAF60942.1| 218|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform b protein.
Length = 218
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 281 FMAENLHSEDFPIKFCC*SPICDFKYEMKS--TTANH 177
++ LHS+D P K +CD KY+ + ANH
Sbjct: 180 YLHSGLHSDDIPFKCSLCGSLCDGKYDFAAHLVYANH 216
>AC006833-11|AAU87801.1| 175|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform c protein.
Length = 175
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 281 FMAENLHSEDFPIKFCC*SPICDFKYEMKS--TTANH 177
++ LHS+D P K +CD KY+ + ANH
Sbjct: 137 YLHSGLHSDDIPFKCSLCGSLCDGKYDFAAHLVYANH 173
>AC006833-10|AAU87800.1| 262|Caenorhabditis elegans Enhancer of
hand mutation hnd-1protein 3, isoform a protein.
Length = 262
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 281 FMAENLHSEDFPIKFCC*SPICDFKYEMKS--TTANH 177
++ LHS+D P K +CD KY+ + ANH
Sbjct: 224 YLHSGLHSDDIPFKCSLCGSLCDGKYDFAAHLVYANH 260
>U40938-2|AAQ65206.1| 463|Caenorhabditis elegans Hypothetical
protein D1009.3b protein.
Length = 463
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 VLRHEEFSEGCEAACNGPYANRW-SKTMVGYGPEDTHFVVELT 392
+LR E E C+ C+ +AN W + V +G + + +++T
Sbjct: 307 ILRIEIQGETCDLTCSKRFANTWVGEWKVNFGKKQDGYKIQIT 349
>U40938-1|AAA81695.2| 465|Caenorhabditis elegans Hypothetical
protein D1009.3a protein.
Length = 465
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 267 VLRHEEFSEGCEAACNGPYANRW-SKTMVGYGPEDTHFVVELT 392
+LR E E C+ C+ +AN W + V +G + + +++T
Sbjct: 309 ILRIEIQGETCDLTCSKRFANTWVGEWKVNFGKKQDGYKIQIT 351
>U23176-6|AAC46718.1| 1374|Caenorhabditis elegans Hypothetical
protein F21H12.6 protein.
Length = 1374
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 315 GPYANRWSKTMVGYGPEDTHFVVELTYNYG--VTHYEQGNDFLGITVQSSESLKRAQTNN 488
GP N WSK++ G + V ++ G + DF G+ +S SL TN
Sbjct: 766 GPIGNEWSKSITVQGGKTLEACVVRAWSRGKNPVDVDMTIDFFGVKKPTSISLIHGATNT 825
Query: 489 WPIK 500
PI+
Sbjct: 826 -PIR 828
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,242,869
Number of Sequences: 27780
Number of extensions: 350067
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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