Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F15
(771 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA... 198 9e-50
UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-direct... 190 4e-47
UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit R... 186 5e-46
UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polyme... 184 3e-45
UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I la... 179 8e-44
UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 175 1e-42
UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase... 170 4e-41
UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit R... 170 4e-41
UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella ve... 150 3e-35
UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3; Caeno... 139 6e-32
UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1; Filob... 134 3e-30
UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit R... 132 9e-30
UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I la... 130 3e-29
UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 128 1e-28
UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3; Sorda... 126 8e-28
UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole geno... 125 1e-27
UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarro... 124 2e-27
UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza... 124 3e-27
UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4; Peziz... 123 6e-27
UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2; Ostre... 121 2e-26
UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K chai... 120 5e-26
UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babes... 119 7e-26
UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 118 1e-25
UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8; Eurot... 118 2e-25
UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustil... 117 3e-25
UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1; Encep... 117 4e-25
UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2; Theil... 116 7e-25
UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit R... 115 1e-24
UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2; Oligo... 111 2e-23
UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polyme... 109 7e-23
UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1; Ajell... 105 9e-22
UniRef50_Q5CFH2 Cluster: RNA polymerase A/beta'/A'' subunit; n=1... 104 3e-21
UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 103 6e-21
UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 101 3e-20
UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasm... 100 5e-20
UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giard... 95 1e-18
UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emili... 92 2e-17
UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:... 91 3e-17
UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 fa... 91 4e-17
UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Param... 88 2e-16
UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guill... 85 2e-15
UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III ... 85 2e-15
UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15; Euka... 84 3e-15
UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest... 84 4e-15
UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit R... 84 4e-15
UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7; Trypa... 83 6e-15
UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest ... 83 6e-15
UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest ... 83 7e-15
UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13; Euka... 83 7e-15
UniRef50_Q5C3D2 Cluster: SJCHGC05045 protein; n=1; Schistosoma j... 82 1e-14
UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit ... 82 1e-14
UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A''... 82 2e-14
UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2; Stylo... 81 2e-14
UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3; Crypt... 81 2e-14
UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest s... 81 4e-14
UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guill... 80 5e-14
UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 80 5e-14
UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza... 80 7e-14
UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit... 80 7e-14
UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing ... 79 9e-14
UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A''... 79 9e-14
UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Param... 79 1e-13
UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 79 1e-13
UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A''... 79 2e-13
UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit... 78 2e-13
UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2; Dicty... 78 3e-13
UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1; Encep... 78 3e-13
UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit ... 78 3e-13
UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegl... 77 4e-13
UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 77 4e-13
UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A''... 77 4e-13
UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit... 77 4e-13
UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|... 77 5e-13
UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11; Euph... 76 9e-13
UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A''... 76 9e-13
UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit ... 76 9e-13
UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19; Fung... 76 1e-12
UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'... 76 1e-12
UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest ... 75 1e-12
UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 75 1e-12
UniRef50_A5ATH2 Cluster: Putative uncharacterized protein; n=1; ... 75 1e-12
UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4; Eukar... 75 2e-12
UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit... 75 2e-12
UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit ... 75 2e-12
UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit ... 75 2e-12
UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A''... 75 3e-12
UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; ... 75 3e-12
UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit ... 75 3e-12
UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A''... 74 3e-12
UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A''... 74 5e-12
UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7; Magno... 73 6e-12
UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 73 8e-12
UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit... 73 8e-12
UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A''... 73 1e-11
UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1; Trich... 72 1e-11
UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3; Eukar... 72 2e-11
UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasm... 71 2e-11
UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2; Scler... 71 3e-11
UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A''... 71 3e-11
UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2; Trich... 70 6e-11
UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2; Ascom... 69 1e-10
UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1; Anton... 69 1e-10
UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest sub... 69 1e-10
UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4; Dipte... 69 1e-10
UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasm... 69 1e-10
UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetra... 69 2e-10
UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit... 69 2e-10
UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1; Cerat... 68 2e-10
UniRef50_A4GI99 Cluster: RpoA2 RNA polymerase subunit A''; n=1; ... 65 2e-09
UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent viru... 64 3e-09
UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes... 64 3e-09
UniRef50_Q7Z755 Cluster: POLR3A protein; n=5; Metazoa|Rep: POLR3... 62 2e-08
UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2; lamii... 60 5e-08
UniRef50_UPI0000E46842 Cluster: PREDICTED: hypothetical protein,... 58 2e-07
UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giard... 56 1e-06
UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entam... 56 1e-06
UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1; Arabi... 56 1e-06
UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3; Lymph... 55 2e-06
UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole gen... 55 2e-06
UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; ... 54 3e-06
UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1; ... 54 5e-06
UniRef50_Q23692 Cluster: RNA polymerase II, large subunit; n=1; ... 52 2e-05
UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5; Ranav... 50 8e-05
UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6; Irido... 49 1e-04
UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni... 48 3e-04
UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis... 47 6e-04
UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza... 44 0.006
UniRef50_Q5DD92 Cluster: SJCHGC09439 protein; n=1; Schistosoma j... 43 0.010
UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1; Oltma... 31 0.018
UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1; Bigel... 40 0.052
UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1; March... 39 0.16
UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit bet... 38 0.37
UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit bet... 28 0.45
UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit bet... 37 0.48
UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit bet... 31 0.58
UniRef50_A3A384 Cluster: DNA-directed RNA polymerase; n=2; Oryza... 36 0.84
UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.84
UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit bet... 36 0.84
UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.1
UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.5
UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.5
UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.5
UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit bet... 36 1.5
UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit bet... 35 1.9
UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit bet... 29 2.2
UniRef50_Q7PXW8 Cluster: ENSANGP00000017385; n=1; Anopheles gamb... 35 2.6
UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit bet... 35 2.6
UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2; Bacte... 34 4.5
UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Lepto... 34 4.5
UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit bet... 33 5.9
UniRef50_Q4UCH6 Cluster: Putative uncharacterized protein; n=2; ... 33 7.9
UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit bet... 33 7.9
UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit bet... 33 7.9
UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit bet... 33 7.9
>UniRef50_UPI0000D56583 Cluster: PREDICTED: similar to CG10122-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10122-PA - Tribolium castaneum
Length = 1619
Score = 198 bits (484), Expect = 9e-50
Identities = 90/131 (68%), Positives = 112/131 (85%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+M KY+ LLD+NRL NDIH MA TYGIEAA K+I+KE+Q+VFNVYGI VDPRHL+LIAD
Sbjct: 1487 EMSKYHALLDLNRLNCNDIHKMAETYGIEAAMKIIVKEVQDVFNVYGIKVDPRHLSLIAD 1546
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT+NG FEP+SRKGME+S+SPLQQM+FESSL FL++A + K+D+L + SSCLMVG+ C
Sbjct: 1547 YMTFNGTFEPLSRKGMESSASPLQQMTFESSLTFLRNATIGGKRDNLTNPSSCLMVGKPC 1606
Query: 363 RTGTGVFDLQH 395
TGTG F++ H
Sbjct: 1607 VTGTGCFEVLH 1617
>UniRef50_UPI00015B5184 Cluster: PREDICTED: similar to DNA-directed
RNA polymerase I largest subunit; n=1; Nasonia
vitripennis|Rep: PREDICTED: similar to DNA-directed RNA
polymerase I largest subunit - Nasonia vitripennis
Length = 1694
Score = 190 bits (462), Expect = 4e-47
Identities = 87/129 (67%), Positives = 109/129 (84%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MFKYN +LD++RLYSNDI+ ++ TYGIEAAN+VI+KE+++VF +YGITVD RHL+LIAD
Sbjct: 1546 EMFKYNEILDLHRLYSNDIYGISQTYGIEAANRVIVKEVKDVFKMYGITVDTRHLSLIAD 1605
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT+ G F+P+SRKGME S+SPLQQMSFESSL FLK+A L K DDL S SS LM+G+ C
Sbjct: 1606 YMTFEGRFQPLSRKGMEDSASPLQQMSFESSLNFLKNATLQGKNDDLTSPSSRLMLGQPC 1665
Query: 363 RTGTGVFDL 389
+GTG F L
Sbjct: 1666 NSGTGAFSL 1674
>UniRef50_P91875 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Sophophora|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Drosophila melanogaster (Fruit fly)
Length = 1642
Score = 186 bits (453), Expect = 5e-46
Identities = 89/129 (68%), Positives = 107/129 (82%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MF++N +LD+NRLYSNDIHA+A TYGIEAA++VI+KE+ NVF VYGITVD RHL+LIAD
Sbjct: 1509 EMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIAD 1568
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT++G F+P+SRKGME SSSPLQQMSFESSL FLK A + D+L S SS LMVG
Sbjct: 1569 YMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPV 1628
Query: 363 RTGTGVFDL 389
R GTG F+L
Sbjct: 1629 RNGTGAFEL 1637
>UniRef50_UPI0000DB7146 Cluster: PREDICTED: similar to RNA polymerase
I subunit CG10122-PA; n=1; Apis mellifera|Rep: PREDICTED:
similar to RNA polymerase I subunit CG10122-PA - Apis
mellifera
Length = 1665
Score = 184 bits (447), Expect = 3e-45
Identities = 84/129 (65%), Positives = 112/129 (86%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MFKY+ L++N+LYSNDI++++ TYGIEAAN+VIIKE+++VF +YGITVD RHL+LIAD
Sbjct: 1523 EMFKYDKSLNLNQLYSNDIYSISQTYGIEAANRVIIKEVRDVFKMYGITVDSRHLSLIAD 1582
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT++G F+P+SRKGME S+SPLQQMSFESSL FLK+A L K+D+L S SS LM+G+ C
Sbjct: 1583 YMTFDGRFQPLSRKGMEESASPLQQMSFESSLNFLKNAALQGKRDNLESPSSRLMLGQPC 1642
Query: 363 RTGTGVFDL 389
++GTG+ L
Sbjct: 1643 KSGTGICSL 1651
>UniRef50_UPI0000ECC670 Cluster: DNA-directed RNA polymerase I largest
subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa subunit)
(RPA194).; n=5; Gallus gallus|Rep: DNA-directed RNA
polymerase I largest subunit (EC 2.7.7.6) (RNA polymerase
I 194 kDa subunit) (RPA194). - Gallus gallus
Length = 917
Score = 179 bits (435), Expect = 8e-44
Identities = 77/130 (59%), Positives = 111/130 (85%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
++F+Y+ +LD+NRLYSNDIHAMA YGIE+A +V+IKEI++VF VYGI VDPRHL+L+AD
Sbjct: 784 ELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVAD 843
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YM + G+++PM+R G+++SSSPLQQM+FE+S FLK+A + D+LRS S+CL++G++
Sbjct: 844 YMCFEGVYKPMNRFGIQSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVV 903
Query: 363 RTGTGVFDLQ 392
+ GTG+FDL+
Sbjct: 904 KGGTGLFDLK 913
>UniRef50_Q16K29 Cluster: DNA-directed RNA polymerase; n=1; Aedes
aegypti|Rep: DNA-directed RNA polymerase - Aedes aegypti
(Yellowfever mosquito)
Length = 1686
Score = 175 bits (425), Expect = 1e-42
Identities = 83/128 (64%), Positives = 103/128 (80%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M K+ LD+NRLYSNDI+A+A TYGIEAA +VI+KE+QNVF VYGIT++PRHL L+ADY
Sbjct: 1551 MTKFYKSLDLNRLYSNDIYAIAQTYGIEAAARVIVKEVQNVFKVYGITINPRHLLLVADY 1610
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
MT +G F+ MSRKGME++ SPLQQ+SFESS+ FLK A L D L S SS LMVG+LC+
Sbjct: 1611 MTADGTFKSMSRKGMESNVSPLQQISFESSIQFLKAAALKGNGDHLDSPSSRLMVGQLCK 1670
Query: 366 TGTGVFDL 389
+GTG F +
Sbjct: 1671 SGTGAFSV 1678
>UniRef50_UPI0000F1FC15 Cluster: PREDICTED: similar to polymerase
(RNA) I polypeptide A, 194kDa; n=1; Danio rerio|Rep:
PREDICTED: similar to polymerase (RNA) I polypeptide A,
194kDa - Danio rerio
Length = 1221
Score = 170 bits (413), Expect = 4e-41
Identities = 75/130 (57%), Positives = 106/130 (81%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MFKY +LD+ RLYSN++HAMA+TYGIE A +VI KEI++VF VYGI VDPRHL+L+AD
Sbjct: 1088 EMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVAD 1147
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YM + G+++P++R G++++SSPLQQM+FE+S FLK A + D L S S+CL+VG++
Sbjct: 1148 YMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVV 1207
Query: 363 RTGTGVFDLQ 392
+ GTG+FDL+
Sbjct: 1208 KGGTGIFDLK 1217
>UniRef50_O95602 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=39; Euteleostomi|Rep: DNA-directed RNA polymerase I
subunit RPA1 - Homo sapiens (Human)
Length = 1717
Score = 170 bits (413), Expect = 4e-41
Identities = 77/130 (59%), Positives = 107/130 (82%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
++FKY +LD+ RLYSNDIHA+ANTYGIEA +VI KEI++VF VYGI VDPRHL+L+AD
Sbjct: 1585 ELFKYAEVLDLRRLYSNDIHAIANTYGIEAL-RVIEKEIKDVFAVYGIAVDPRHLSLVAD 1643
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YM + G+++P++R G+ ++SSPLQQM+FE+S FLK A + D+LRS S+CL+VG++
Sbjct: 1644 YMCFEGVYKPLNRFGIRSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVV 1703
Query: 363 RTGTGVFDLQ 392
R GTG+F+L+
Sbjct: 1704 RGGTGLFELK 1713
>UniRef50_A7S9W9 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 1242
Score = 150 bits (364), Expect = 3e-35
Identities = 68/127 (53%), Positives = 99/127 (77%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
F+Y +++++++LY+NDIHA+A TYGIEAA + I KE++NVF YGI VDPRHLTL++DYM
Sbjct: 1111 FRYPNIINVDKLYTNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYM 1170
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
TY G + +R G+E+S+SP Q+MSFE++ FL+ A+L+ + L+S SS L+VGR+
Sbjct: 1171 TYEGKIKAFNRIGIESSASPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGG 1230
Query: 369 GTGVFDL 389
GTG F+L
Sbjct: 1231 GTGSFEL 1237
>UniRef50_O17628 Cluster: DNA-directed RNA polymerase; n=3;
Caenorhabditis|Rep: DNA-directed RNA polymerase -
Caenorhabditis elegans
Length = 1737
Score = 139 bits (337), Expect = 6e-32
Identities = 63/127 (49%), Positives = 94/127 (74%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
FK+ +LD+N +YSND++ + YG+EA +K I E+ NVF VYGI V RHL+L ADYM
Sbjct: 1584 FKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYM 1643
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
T+ G +P +R M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R
Sbjct: 1644 TFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG 1703
Query: 369 GTGVFDL 389
GTG FDL
Sbjct: 1704 GTGSFDL 1710
>UniRef50_Q5KIF6 Cluster: DNA-directed RNA polymerase; n=1;
Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 1727
Score = 134 bits (323), Expect = 3e-30
Identities = 61/125 (48%), Positives = 91/125 (72%)
Frame = +3
Query: 18 NHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYN 197
+ L+D++RL SNDI+A+ T+G+EAA + II E+ +VF YGI VD RHLT+IADYMT+
Sbjct: 1598 DELVDLDRLSSNDIYAILQTFGVEAARRAIIDEVSSVFGAYGIAVDYRHLTIIADYMTHA 1657
Query: 198 GIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
G F P +R G+ A SSPL + SFE+++ FL +A L+ DDL S ++ +++G+ +GTG
Sbjct: 1658 GGFRPFNRTGISAKSSPLLKASFETTVAFLSEATLHGDFDDLTSPAAKIVMGKPSASGTG 1717
Query: 378 VFDLQ 392
FD++
Sbjct: 1718 AFDIR 1722
>UniRef50_P15398 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=2; Fungi/Metazoa group|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Schizosaccharomyces pombe (Fission
yeast)
Length = 1689
Score = 132 bits (319), Expect = 9e-30
Identities = 63/125 (50%), Positives = 87/125 (69%)
Frame = +3
Query: 15 YNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTY 194
YN + MN +Y+NDI A+ YG+EAA I+ E+ +VF VYGI VDPRHL+LIADYMT+
Sbjct: 1556 YNEI-SMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTF 1614
Query: 195 NGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
G ++ +R G+E ++SP +MSFE++ FL +A L DDL + SS L+VGR+ GT
Sbjct: 1615 EGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGT 1674
Query: 375 GVFDL 389
G FD+
Sbjct: 1675 GSFDI 1679
>UniRef50_UPI00004998AA Cluster: DNA-directed RNA polymerase I largest
subunit; n=4; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase I largest subunit - Entamoeba
histolytica HM-1:IMSS
Length = 1522
Score = 130 bits (315), Expect = 3e-29
Identities = 57/126 (45%), Positives = 91/126 (72%)
Frame = +3
Query: 12 KYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
++ +L+D++ + +ND++A+ N YG+EAA V+I EI +VF YGI VDPRHL L+ADYMT
Sbjct: 1390 QFGNLVDVDTVETNDVYAVLNMYGVEAARTVLIHEIDSVFKAYGIDVDPRHLNLVADYMT 1449
Query: 192 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 371
Y G ++ ++R GM+ + SP +++FE+SL FL ++ +KD+LRS S +++G+ G
Sbjct: 1450 YEGEYKSLNRSGMDHNPSPFTKITFETSLGFLAKTCVSGQKDNLRSPSGSVVMGKNMVFG 1509
Query: 372 TGVFDL 389
TG FD+
Sbjct: 1510 TGAFDI 1515
>UniRef50_Q23DD6 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1727
Score = 128 bits (310), Expect = 1e-28
Identities = 64/131 (48%), Positives = 90/131 (68%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
Q++K +H D N + SNDI A+ YGIEAA I+KEI VF VYG+ VD RHL LIAD
Sbjct: 1596 QIWKMDHF-DSNTIDSNDIAALNKCYGIEAARNAIVKEIVTVFGVYGVVVDYRHLYLIAD 1654
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
Y+T++G + M+R M+ S SP +MSFE+ + FL +A N++ D L + SS +++GR+
Sbjct: 1655 YLTFSGEMKAMNRVWMDESISPFLKMSFETCVKFLTNAATNNEIDTLSTPSSSIVLGRVP 1714
Query: 363 RTGTGVFDLQH 395
+ GTGVFD+ H
Sbjct: 1715 QVGTGVFDILH 1725
>UniRef50_A4RCX8 Cluster: DNA-directed RNA polymerase; n=3;
Sordariomycetes|Rep: DNA-directed RNA polymerase -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 1719
Score = 126 bits (303), Expect = 8e-28
Identities = 60/128 (46%), Positives = 86/128 (67%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M +Y ++ NR+ +ND+ A+ YG+EA II+E++ VF + ITVD RHL LIAD+
Sbjct: 1577 MQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHLNLIADH 1636
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
MT +G F P +R G+ + SP +MSFE++L FLKDA+L+ DDL + S L++GRL
Sbjct: 1637 MTRSGGFTPFNRMGLSGNVSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGRLVMGRLGH 1696
Query: 366 TGTGVFDL 389
GTG FD+
Sbjct: 1697 VGTGAFDV 1704
>UniRef50_A7PWB4 Cluster: Chromosome chr8 scaffold_34, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr8 scaffold_34, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1518
Score = 125 bits (302), Expect = 1e-27
Identities = 61/128 (47%), Positives = 89/128 (69%), Gaps = 1/128 (0%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
+K LD+ +YSN++HAM NT+G+EAA IIKE+ NVFN YG+ V+ RHL+LIAD+M
Sbjct: 1385 WKMQDELDVRYVYSNNVHAMLNTFGVEAARATIIKEVFNVFNAYGVKVNIRHLSLIADFM 1444
Query: 189 TYNGIFEPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
T++G + PM+R G A S SP +M+FE++ F+ +A + D+L SAS+ + +G +
Sbjct: 1445 THSGGYRPMNRHGGIAESVSPFSKMTFETASKFIVEAASHGMTDNLESASARICLGLPVK 1504
Query: 366 TGTGVFDL 389
GTG FDL
Sbjct: 1505 MGTGCFDL 1512
>UniRef50_Q6C1S4 Cluster: DNA-directed RNA polymerase; n=1; Yarrowia
lipolytica|Rep: DNA-directed RNA polymerase - Yarrowia
lipolytica (Candida lipolytica)
Length = 1628
Score = 124 bits (300), Expect = 2e-27
Identities = 57/130 (43%), Positives = 89/130 (68%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+M++ +D+N +YSNDI+A+ TYG+EAA +++EI NVF Y ITV+ RHL LIAD
Sbjct: 1490 EMWEQGEFIDVNAIYSNDIYAVLKTYGVEAARNTMVQEINNVFKTYAITVNLRHLELIAD 1549
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
MT G + +R G+++++SP +MS+E++ FL A+L+ D L S S+ +++GRL
Sbjct: 1550 MMTREGTYLAFNRMGVDSNTSPFLKMSYETTCGFLTKAVLDGGCDALESPSARIVIGRLS 1609
Query: 363 RTGTGVFDLQ 392
GTG FD++
Sbjct: 1610 GVGTGSFDVK 1619
>UniRef50_Q69X40 Cluster: DNA-directed RNA polymerase; n=6; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 1748
Score = 124 bits (298), Expect = 3e-27
Identities = 60/122 (49%), Positives = 84/122 (68%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
LD+N + SNDIHAM NTYG+EAA II E++ VF YGI VD RHL LIAD+MT++G +
Sbjct: 1615 LDINEVRSNDIHAMLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGY 1674
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
PMSR GM + S+SP +M+FE++ F+ +A + + D L S+ + +G+ + GTG F
Sbjct: 1675 RPMSRLGMGQFSTSPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSF 1734
Query: 384 DL 389
L
Sbjct: 1735 GL 1736
>UniRef50_Q7RWI3 Cluster: DNA-directed RNA polymerase; n=4;
Pezizomycotina|Rep: DNA-directed RNA polymerase -
Neurospora crassa
Length = 1674
Score = 123 bits (296), Expect = 6e-27
Identities = 59/128 (46%), Positives = 85/128 (66%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M +Y ++ N++ +NDI + YG+EAA I++E+ VF +GI VDPRHL LI DY
Sbjct: 1534 MQQYADYINPNKIMTNDIAQVLEIYGVEAARNSIVRELSGVFKGHGIGVDPRHLNLIGDY 1593
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
MT NG F P +R G+ + SP +MS+E+++ FLKDA+L+ D L + S L+VG+L
Sbjct: 1594 MTRNGGFTPFNRMGLTGNVSPFTKMSYETTVGFLKDAVLDGDWDSLDTPSGRLVVGKLGV 1653
Query: 366 TGTGVFDL 389
TGTG FD+
Sbjct: 1654 TGTGSFDV 1661
>UniRef50_Q00WA2 Cluster: DNA-directed RNA polymerase; n=2;
Ostreococcus|Rep: DNA-directed RNA polymerase -
Ostreococcus tauri
Length = 1789
Score = 121 bits (292), Expect = 2e-26
Identities = 55/124 (44%), Positives = 82/124 (66%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
L+D++ + SN + + T+G+EA ++ E+Q VF+VYGI VD RHL+LI D+MT G
Sbjct: 1651 LIDVDMIKSNSVWDIMQTFGVEAGRATLVSEVQAVFSVYGIGVDARHLSLIGDFMTQQGE 1710
Query: 204 FEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+ P +R G+E S SP +MS+E++ FL +A + + DDL S SS ++VGR GTG F
Sbjct: 1711 YRPCNRSGIEKSISPFLKMSYETATAFLTEATIRGETDDLSSPSSRIVVGRTVNLGTGSF 1770
Query: 384 DLQH 395
L+H
Sbjct: 1771 SLKH 1774
>UniRef50_Q9SVY0 Cluster: DNA-directed RNA polymerase I 190K
chain-like protein; n=1; Arabidopsis thaliana|Rep:
DNA-directed RNA polymerase I 190K chain-like protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1670
Score = 120 bits (288), Expect = 5e-26
Identities = 59/129 (45%), Positives = 86/129 (66%), Gaps = 1/129 (0%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
++++ LD+ LYSN IH M N +G+EAA + II+EI +VF YGI+V RHL LIADY
Sbjct: 1536 LWEFQDKLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADY 1595
Query: 186 MTYNGIFEPMSRK-GMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
MT++G + PMSR G+ S+SP +M+FE++ F+ A +KD L + S+ + +G
Sbjct: 1596 MTFSGGYRPMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPA 1655
Query: 363 RTGTGVFDL 389
+GTG FDL
Sbjct: 1656 LSGTGCFDL 1664
>UniRef50_A7ARZ5 Cluster: DNA directed RNA polymerase; n=1; Babesia
bovis|Rep: DNA directed RNA polymerase - Babesia bovis
Length = 2016
Score = 119 bits (287), Expect = 7e-26
Identities = 61/119 (51%), Positives = 77/119 (64%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
L+D NRL+ NDI + YGIEAA I+ E+QNVF+VYGI VD RHL+LIAD+MT G
Sbjct: 1855 LVDFNRLHVNDIATVYRYYGIEAARASIVSELQNVFSVYGINVDYRHLSLIADFMTNKGD 1914
Query: 204 FEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
+R GM +SPL QMSFES+L F+ DA DDL S + ++ GR R G G+
Sbjct: 1915 IRTFNRYGMARHASPLLQMSFESTLKFIMDACERGGYDDLGSPAGAIVAGRPIRLGGGL 1973
>UniRef50_Q553A1 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1615
Score = 118 bits (285), Expect = 1e-25
Identities = 53/129 (41%), Positives = 85/129 (65%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
++F+ L ++ +Y+NDI+A+ YG+EA + + EI NVF YGI+VD RHL L+ D
Sbjct: 1482 EIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKRHLILLGD 1541
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT+ G + ++R G+E ++SP Q+MSFE++ FL A L D + S SS +++G++
Sbjct: 1542 YMTFEGGYRALNRIGIENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIV 1601
Query: 363 RTGTGVFDL 389
+ GTG F +
Sbjct: 1602 KNGTGSFTI 1610
>UniRef50_A1CP71 Cluster: DNA-directed RNA polymerase; n=8;
Eurotiomycetidae|Rep: DNA-directed RNA polymerase -
Aspergillus clavatus
Length = 1734
Score = 118 bits (283), Expect = 2e-25
Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 1/129 (0%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M Y ++ + LY+N IH M YG+EAA I++E+ +VF + I+VD RHL LI D
Sbjct: 1601 MRDYQDIIKPHSLYTNSIHHMLTLYGVEAARASIVREMSDVFEGHSISVDNRHLNLIGDV 1660
Query: 186 MTYNGIFEPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
MT +G F +R G+ + SSSPL +MSFE+++ FLKDA++ D+L+S SS ++VGR
Sbjct: 1661 MTQSGGFRAFNRNGLVKDSSSPLAKMSFETTVGFLKDAVIERDFDNLKSPSSRIVVGRAG 1720
Query: 363 RTGTGVFDL 389
GTG FD+
Sbjct: 1721 MVGTGAFDV 1729
>UniRef50_Q4PB85 Cluster: DNA-directed RNA polymerase; n=1; Ustilago
maydis|Rep: DNA-directed RNA polymerase - Ustilago maydis
(Smut fungus)
Length = 1795
Score = 117 bits (282), Expect = 3e-25
Identities = 55/123 (44%), Positives = 84/123 (68%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
++D++ LY+NDI A+ +TYG+EAA I+ E++ +F+ YGI V PRHL LIADY T G
Sbjct: 1662 VIDLDNLYTNDIGAVLHTYGVEAARAAIVAEMRGIFDTYGIAVSPRHLFLIADYQTAAGG 1721
Query: 204 FEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
F P +R G+ SSS L + SFE ++ F+ + L+ + D L++ SS L+VGR +GTG
Sbjct: 1722 FRPFNRSGISESSSTLLKASFEMTMAFIGGSALHGEVDMLKTPSSKLVVGRPVNSGTGTP 1781
Query: 384 DLQ 392
+++
Sbjct: 1782 EIR 1784
>UniRef50_Q8SS15 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1395
Score = 117 bits (281), Expect = 4e-25
Identities = 63/131 (48%), Positives = 81/131 (61%), Gaps = 3/131 (2%)
Frame = +3
Query: 15 YNHLLDMNRLY---SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
Y LLD+ +Y SNDI+ + T G+EAA II E+ VF+VYGI++D RHL LIADY
Sbjct: 1258 YEDLLDILDIYNAESNDIYDVYLTLGVEAARHAIINEVVKVFDVYGISIDIRHLLLIADY 1317
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
MT G + P SR G+ A SP+Q++SFES K A +D L + S+ L VG R
Sbjct: 1318 MTRKGSYSPFSRHGLGADDSPIQRISFESCYSNFKTAATFHLEDKLSNPSASLTVGNPVR 1377
Query: 366 TGTGVFDLQHS 398
GTG FDL H+
Sbjct: 1378 CGTGCFDLIHN 1388
>UniRef50_Q4UI00 Cluster: DNA-directed RNA polymerase; n=2;
Theileria|Rep: DNA-directed RNA polymerase - Theileria
annulata
Length = 1999
Score = 116 bits (279), Expect = 7e-25
Identities = 58/125 (46%), Positives = 78/125 (62%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
+++D NR+ ND+ + YGIEAA I+ E+Q VF+VYGI VD RHLTLIAD+MT G
Sbjct: 1854 NIVDFNRIKMNDVATVFKYYGIEAARSCIVSELQKVFSVYGIKVDYRHLTLIADFMTQKG 1913
Query: 201 IFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
+R GM +SPL QMSFES++ FL DA D+L+S + LM G+ G+ +
Sbjct: 1914 DVRTFTRYGMARHTSPLLQMSFESTMKFLMDASERGAYDNLKSPAGGLMTGKPVHVGSSL 1973
Query: 381 FDLQH 395
L H
Sbjct: 1974 CRLMH 1978
>UniRef50_P10964 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=11; Saccharomycetales|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1664
Score = 115 bits (277), Expect = 1e-24
Identities = 55/128 (42%), Positives = 85/128 (66%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M+ +D++ + SND+ A+ TYG+EAA I+ EI NVF+ Y I+V RHL LIAD
Sbjct: 1529 MWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADM 1588
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
MT G + +R+GME S+S +MS+E++ FL A+L+++++ L S S+ ++VG+L
Sbjct: 1589 MTRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNN 1648
Query: 366 TGTGVFDL 389
GTG FD+
Sbjct: 1649 VGTGSFDV 1656
>UniRef50_A0DJB3 Cluster: DNA-directed RNA polymerase; n=2;
Oligohymenophorea|Rep: DNA-directed RNA polymerase -
Paramecium tetraurelia
Length = 1696
Score = 111 bits (266), Expect = 2e-23
Identities = 54/121 (44%), Positives = 80/121 (66%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+++N + NDI A+ N +GIEAA IIKEI VF YG+ VD RHL LIADYMT+ G
Sbjct: 1568 INLNNIDCNDIVAIMNAFGIEAARNAIIKEILAVFGAYGVAVDYRHLYLIADYMTFGGQI 1627
Query: 207 EPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 386
M+R M+ +++P +M+FE+S FL +A LN + D + SS L++GR+ + G+ + D
Sbjct: 1628 RAMNRIYMDFNTAPFGKMTFETSTQFLTNACLNRETDTFNNLSSQLVIGRVPKVGSNLCD 1687
Query: 387 L 389
+
Sbjct: 1688 V 1688
>UniRef50_UPI0000E46841 Cluster: PREDICTED: similar to RNA polymerase
I large subunit; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to RNA polymerase I large subunit -
Strongylocentrotus purpuratus
Length = 1742
Score = 109 bits (262), Expect = 7e-23
Identities = 45/87 (51%), Positives = 72/87 (82%)
Frame = +3
Query: 114 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 293
E+++VF+VYGITVDPRHL+L++DYMT+ G++ P +R G+E+++SP+Q+M+FES + FL++
Sbjct: 1656 EVRDVFSVYGITVDPRHLSLVSDYMTFEGVYRPFNRIGLESNASPIQKMTFESCMRFLRE 1715
Query: 294 AILNSKKDDLRSASSCLMVGRLCRTGT 374
A + KD+L+S S+ L+VGR+ GT
Sbjct: 1716 ATIQGAKDNLQSPSARLVVGRVVNGGT 1742
>UniRef50_A6R8S3 Cluster: DNA-directed RNA polymerase; n=1;
Ajellomyces capsulatus NAm1|Rep: DNA-directed RNA
polymerase - Ajellomyces capsulatus NAm1
Length = 1573
Score = 105 bits (253), Expect = 9e-22
Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M +Y + + LY+N I M YG+EAA II+E+ VF+ + I+VD RHL LI D
Sbjct: 1440 MREYQDFVYPHSLYTNSIADMLVMYGVEAARACIIREMAAVFDGHSISVDNRHLNLIGDV 1499
Query: 186 MTYNGIFEPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
MT+ G F +R G+ + S+SP +MSFE+++ FL+DA+L D+L SS +++GR+
Sbjct: 1500 MTHAGSFRAFNRMGLVKDSTSPFMKMSFETTVGFLRDAVLERDCDNLNGPSSRIVMGRVG 1559
Query: 363 RTGTGVFDL 389
GTG FD+
Sbjct: 1560 TVGTGAFDV 1568
>UniRef50_Q5CFH2 Cluster: RNA polymerase A/beta'/A'' subunit; n=1;
Cryptosporidium hominis|Rep: RNA polymerase A/beta'/A''
subunit - Cryptosporidium hominis
Length = 472
Score = 104 bits (249), Expect = 3e-21
Identities = 52/119 (43%), Positives = 78/119 (65%), Gaps = 1/119 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
++ +++ NDI + YG+EAA II E++NVF+VYGI VD RHLTLI+D +T +G
Sbjct: 298 INHDKIRFNDIQTVYKYYGVEAARHCIINELRNVFSVYGINVDYRHLTLISDSITASGKL 357
Query: 207 EPMSRKG-MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
+R G + + SP QMSFE+S+ FL +A L D+L+S +S + VG++ GTG+
Sbjct: 358 RVFNRMGTISYNISPFLQMSFETSMKFLTEACLRGALDNLKSPASSISVGKMVSVGTGI 416
>UniRef50_A5KB21 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 2695
Score = 103 bits (246), Expect = 6e-21
Identities = 51/128 (39%), Positives = 76/128 (59%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D +LY NDI+ + TYGIEA I KE++ VF YGI +D RHL+ I+D+MT+ G
Sbjct: 2567 IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDL 2626
Query: 207 EPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 386
+ SR G+ + +MSFE + FL +++ D L +ASS L G+ + GT V D
Sbjct: 2627 KSFSRHGLGCFRNVFHKMSFECATNFLTQGCVHNSVDYLSTASSSLFFGKPIKVGTNVAD 2686
Query: 387 LQHSHLYG 410
+ +H+ G
Sbjct: 2687 IV-THIEG 2693
>UniRef50_Q7RJK4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2594
Score = 101 bits (241), Expect = 3e-20
Identities = 50/129 (38%), Positives = 74/129 (57%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D +LY NDI+ + TYGIEA I KE++ VF YGI +D RHL+ I+D+MT+ G
Sbjct: 2466 IDKTKLYCNDIYTIVKTYGIEAGRLCITKELKKVFEAYGIKIDFRHLSFISDFMTHTGDL 2525
Query: 207 EPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 386
+ +R GM A + +MSFE + F+ + + D L + SS L G+ + GT V +
Sbjct: 2526 KSFNRYGMAACRNVFHKMSFECATTFMIQGCIQNSVDYLSTPSSSLFFGKHIKVGTNVSN 2585
Query: 387 LQHSHLYGK 413
+ S GK
Sbjct: 2586 IVTSIKAGK 2594
>UniRef50_Q26008 Cluster: DNA-directed RNA polymerase; n=2; Plasmodium
falciparum|Rep: DNA-directed RNA polymerase - Plasmodium
falciparum
Length = 2910
Score = 100 bits (239), Expect = 5e-20
Identities = 48/121 (39%), Positives = 74/121 (61%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D +LY NDI+A+ TYGIEA I KE++ VF+ YGI +D RHL+ I+D+MT+ G
Sbjct: 2784 IDKTKLYCNDIYAIVKTYGIEAGRLCITKELKKVFDAYGIQIDFRHLSFISDFMTHTGDL 2843
Query: 207 EPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 386
+ +R G+ + +MSFE + FL +++ D L +ASS L G+ + GT + D
Sbjct: 2844 KAFNRHGLGYFRNVFHKMSFECATNFLIQGCIHNSIDYLSTASSSLFFGKHIKVGTNLAD 2903
Query: 387 L 389
+
Sbjct: 2904 I 2904
>UniRef50_Q7R0K2 Cluster: DNA-directed RNA polymerase; n=1; Giardia
lamblia ATCC 50803|Rep: DNA-directed RNA polymerase -
Giardia lamblia ATCC 50803
Length = 2142
Score = 95.5 bits (227), Expect = 1e-18
Identities = 51/124 (41%), Positives = 71/124 (57%)
Frame = +3
Query: 18 NHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYN 197
N ++ + +Y+N+I + YGIEAA II+EI VF+ Y I VD RHL+LIAD MT +
Sbjct: 2015 NPFINFDNIYTNNISQIFEIYGIEAARNAIIEEIHRVFSTYHIEVDERHLSLIADSMTLS 2074
Query: 198 GIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
G ++R M + L + SFES+ L L S D LR+ + + VG+ GTG
Sbjct: 2075 GCVRGLNRLEMRHQTEELLKASFESACTSLAAGALTSGFDSLRAPAGAVTVGQYPSQGTG 2134
Query: 378 VFDL 389
FDL
Sbjct: 2135 SFDL 2138
>UniRef50_Q4A369 Cluster: DNA-directed RNA polymerase; n=1; Emiliania
huxleyi virus 86|Rep: DNA-directed RNA polymerase -
Emiliania huxleyi virus 86
Length = 1468
Score = 91.9 bits (218), Expect = 2e-17
Identities = 47/124 (37%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D ++ +NDIH + NT GIEAA +I E+ + G +DPRH+ L A MT G
Sbjct: 1291 VDWTKVMTNDIHNVVNTLGIEAALTMIFNELHSTLTADGSYIDPRHIELTASTMTLRGYV 1350
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLR-SASSCLMVGRLCRTGTGV 380
P++R G+ + PL + SFE + LKDA + ++ +D+ S S+ +M+G+L GTG
Sbjct: 1351 MPLNRHGLNNIKTGPLTRSSFEETSEVLKDAAIFAESEDVSGSVSASIMMGQLSAIGTGR 1410
Query: 381 FDLQ 392
FD++
Sbjct: 1411 FDVR 1414
>UniRef50_Q74MX8 Cluster: NEQ427; n=1; Nanoarchaeum equitans|Rep:
NEQ427 - Nanoarchaeum equitans
Length = 374
Score = 91.1 bits (216), Expect = 3e-17
Identities = 50/118 (42%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +NDIH +A GI+AA + II+EIQ V G+ +D R+L LIAD MTY G
Sbjct: 237 IDKTRTTTNDIHEIAKVLGIDAAREAIIEEIQKVLEEQGLEIDVRYLLLIADVMTYYGEV 296
Query: 207 EPMSRKG-MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+R G ME SPL++ +FE L DA L +KDDLR+ +++ + GTG
Sbjct: 297 LGFTRHGLMERKPSPLERATFEVPFKNLADAALLGEKDDLRAVIVNVLINQPAPMGTG 354
>UniRef50_UPI00006CF1E9 Cluster: RNA polymerase Rpb1, domain 2 family
protein; n=1; Tetrahymena thermophila SB210|Rep: RNA
polymerase Rpb1, domain 2 family protein - Tetrahymena
thermophila SB210
Length = 1759
Score = 90.6 bits (215), Expect = 4e-17
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R YSNDI + GIEA + I+ +I+ V YGI ++ RHL ++A++MT G
Sbjct: 1408 VDATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYINYRHLAILAEWMTVRGRL 1467
Query: 207 EPMSRKGME--ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
P++R G+ S L++ SFE ++ L A + +KDDL+ + ++ G+ C GTG
Sbjct: 1468 TPINRNGINRIPGLSCLRKSSFEETVDILNTAAIFFEKDDLKGVTENIIFGQNCDIGTGC 1527
Query: 381 FDL 389
FDL
Sbjct: 1528 FDL 1530
>UniRef50_Q3SE61 Cluster: DNA-directed RNA polymerase; n=2; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1751
Score = 88.2 bits (209), Expect = 2e-16
Identities = 45/131 (34%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
++ + H+ D R ++D++ ++ GIEAA ++ E + +FN YGI ++ RHL L+ D
Sbjct: 1400 EILRLEHV-DQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYGIYINYRHLYLLYD 1458
Query: 183 YMTYNGIFEPMSRKGME--ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGR 356
+MT+ G ++R G+ S L++ SFE ++ L DA + S+ D +R S ++ G+
Sbjct: 1459 WMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAVFSEIDHMRGLSENIIFGQ 1518
Query: 357 LCRTGTGVFDL 389
LC GTG F+L
Sbjct: 1519 LCPHGTGCFEL 1529
>UniRef50_Q9AW39 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1434
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/129 (30%), Positives = 73/129 (56%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
F + ++ ++++DI M+ +GIEA +++ E+ N+F GI + +H+ I+DYM
Sbjct: 1306 FSLSEFFKIDEIFTSDILKMSIIFGIEAGREILTIELMNIFKNQGIVISNKHIDTISDYM 1365
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
T G P +R M+ + +Q++S+E++LL LK L K + + S + G C
Sbjct: 1366 TRLGYLRPFNRNYMKEEAG-IQEISYETALLHLKKYALGKKIESIECISDKIAFGLPCNI 1424
Query: 369 GTGVFDLQH 395
GTG+F++ +
Sbjct: 1425 GTGLFEINN 1433
>UniRef50_UPI000049A544 Cluster: DNA-directed RNA polymerase III
largest subunit; n=1; Entamoeba histolytica
HM-1:IMSS|Rep: DNA-directed RNA polymerase III largest
subunit - Entamoeba histolytica HM-1:IMSS
Length = 1379
Score = 84.6 bits (200), Expect = 2e-15
Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN I + GIEAA II EI+NV + YG+++D RHL L++D MT+ G+ ++R G
Sbjct: 1247 SNHIAVVEKVLGIEAARSTIISEIKNVMDAYGLSIDVRHLLLLSDLMTFKGVILGITRYG 1306
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S SFE + L DA ++S+KD+++ S ++VG GTG+ +
Sbjct: 1307 ISKMKDSVFTFASFERTNDHLFDAAVHSRKDEIKGVSESIIVGNQVGLGTGLMQI 1361
>UniRef50_Q01DV6 Cluster: DNA-directed RNA polymerase; n=15;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1406
Score = 84.2 bits (199), Expect = 3e-15
Identities = 47/126 (37%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
+N++ T GIEAA IIKEI + +G+++D RH L+AD MTY G ++R G
Sbjct: 1256 TNNVMECERTLGIEAARACIIKEIDDTMRAHGMSIDNRHSMLLADVMTYKGEVLGITRFG 1315
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHL 404
M + S L SFE + L DA L+ + D + S C+++G GTG+F LQH +
Sbjct: 1316 MAKMKDSVLMLASFEKTTDHLFDAALHGRTDYIDGVSECIIMGIPMPIGTGMFRLQHRAM 1375
Query: 405 YGKVNL 422
+V++
Sbjct: 1376 KLEVDI 1381
>UniRef50_Q4U940 Cluster: DNA-directed RNA polymerase III largest
subunit (RPC homologue), putative; n=2; Theileria|Rep:
DNA-directed RNA polymerase III largest subunit (RPC
homologue), putative - Theileria annulata
Length = 1648
Score = 83.8 bits (198), Expect = 4e-15
Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN + +A GIEAA VII EIQ + Y I +D R++ L+ D MT+ G ++R G
Sbjct: 1530 SNHVSEVAKVLGIEAARSVIISEIQKCMDAYSIDIDCRYMKLLGDVMTFRGEVVGINRFG 1589
Query: 228 ME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 401
++ SS L SFE + L +A L+ ++D ++ S C+++G+ GTG FD+ S+
Sbjct: 1590 IQKMRSSALMLASFEETNDHLLEAALHHRRDPIKGVSECIIMGKPISLGTGSFDILMSN 1648
>UniRef50_P16355 Cluster: DNA-directed RNA polymerase I subunit RPA1;
n=3; Trypanosoma brucei|Rep: DNA-directed RNA polymerase
I subunit RPA1 - Trypanosoma brucei brucei
Length = 1744
Score = 83.8 bits (198), Expect = 4e-15
Identities = 48/117 (41%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+ +++ S DI M +GIE+ + E+ +FN Y VDPRHL+LIAD T+ G +
Sbjct: 1609 IKLHQACSTDIRDMGTYFGIESGYAALYDELNKLFNRYN--VDPRHLSLIADTSTHRGRW 1666
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
E + G+ S+SPL QM+F SS +L A+ DDL S SS +MVG R GT
Sbjct: 1667 ENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDDLESFSSAIMVGERPRVGT 1723
>UniRef50_Q4D133 Cluster: DNA-directed RNA polymerase; n=7;
Trypanosomatidae|Rep: DNA-directed RNA polymerase -
Trypanosoma cruzi
Length = 1802
Score = 83.4 bits (197), Expect = 6e-15
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+ + + S DI MAN +G+E+A + + E+ +F Y +VD RHLTLIAD T+ G +
Sbjct: 1667 IKLRQARSTDIRDMANWFGVESAYRTLYDELFKLFKRY--SVDHRHLTLIADAATHRGTW 1724
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
E + G+ S+SPL QM+F SS +L A+ D+L+S SS +MVG + GT
Sbjct: 1725 ENFNFTGVISQSASPLFQMTFASSKRWLHTAVSRGLSDELQSISSAIMVGERPKVGTACV 1784
Query: 384 DL 389
L
Sbjct: 1785 KL 1786
>UniRef50_A7AWJ0 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=2; Eukaryota|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Babesia bovis
Length = 1746
Score = 83.4 bits (197), Expect = 6e-15
Identities = 45/122 (36%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SNDI + + GIEAA +++E++ V + G V+ RHL+L+ D MT G
Sbjct: 1340 VDAQKSISNDISEIFHVLGIEAARMALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHI 1399
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ A PL + SFE +L L DA + ++ D L+ + +M+G+LC GTG F
Sbjct: 1400 MSITRHGLNRADRGPLVKCSFEETLEALVDAAVFAELDLLKGVTENVMLGQLCPMGTGSF 1459
Query: 384 DL 389
D+
Sbjct: 1460 DI 1461
>UniRef50_Q4N0F9 Cluster: DNA-directed RNA polymerase II largest
subunit, putative; n=3; Apicomplexa|Rep: DNA-directed RNA
polymerase II largest subunit, putative - Theileria parva
Length = 1681
Score = 83.0 bits (196), Expect = 7e-15
Identities = 43/122 (35%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + +SND+ + + +GIEAA + +++EI+ V + G V+ RHL+L+ D MT G
Sbjct: 1336 VDYTKTFSNDVSEIFHVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYL 1395
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ A PL + SFE +L L A + + D L+ + ++VG+L GTG F
Sbjct: 1396 MSITRHGINRADRGPLIKCSFEETLETLLTAAVFGEVDHLKGVTENVIVGQLSPYGTGAF 1455
Query: 384 DL 389
D+
Sbjct: 1456 DI 1457
>UniRef50_A5K7P4 Cluster: DNA-directed RNA polymerase; n=13;
Eukaryota|Rep: DNA-directed RNA polymerase - Plasmodium
vivax
Length = 2379
Score = 83.0 bits (196), Expect = 7e-15
Identities = 41/122 (33%), Positives = 71/122 (58%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SNDI + GIEA + ++KE++ V + V+ RHL+++ D MT G
Sbjct: 1838 VDYKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQRGYL 1897
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ PL + SFE ++ L +A ++ D+L+ + +M+G+LC+ GTGVF
Sbjct: 1898 MSITRHGINRVDRGPLVKCSFEETVEILLEAAAFAQVDNLKGITENIMLGQLCKIGTGVF 1957
Query: 384 DL 389
D+
Sbjct: 1958 DI 1959
>UniRef50_Q5C3D2 Cluster: SJCHGC05045 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC05045 protein - Schistosoma
japonicum (Blood fluke)
Length = 367
Score = 82.2 bits (194), Expect = 1e-14
Identities = 36/83 (43%), Positives = 53/83 (63%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+M +Y + D+N LY+N+I M TYGIEAA + +E+ VF YGI VD RHL+LI D
Sbjct: 285 EMMRYPEVFDLNHLYTNNITVMNETYGIEAARAALQREVSGVFGHYGIHVDSRHLSLIGD 344
Query: 183 YMTYNGIFEPMSRKGMEASSSPL 251
Y+T G++ +R+ + + S L
Sbjct: 345 YLTKLGVYNAFNRRSLSSHPSVL 367
>UniRef50_P14248 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=3; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Plasmodium falciparum (isolate CDC /
Honduras)
Length = 2452
Score = 82.2 bits (194), Expect = 1e-14
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SNDI + GIEA + ++KE++ V + V+ RHL+++ D MT G
Sbjct: 1932 VDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLSILCDVMTQKGYL 1991
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ PL + SFE ++ L +A ++ D+LR + +M+G+LC+ GTG F
Sbjct: 1992 MSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIMLGQLCKIGTGSF 2051
Query: 384 DL 389
D+
Sbjct: 2052 DI 2053
>UniRef50_Q8ZYQ7 Cluster: DNA-directed RNA polymerase subunit A'';
n=5; Thermoproteaceae|Rep: DNA-directed RNA polymerase
subunit A'' - Pyrobaculum aerophilum
Length = 379
Score = 81.8 bits (193), Expect = 2e-14
Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R YSND+H + GIEA ++ +EI+ V G+ VD RH+ L+AD MT++G
Sbjct: 254 VDPTRTYSNDLHEVEEVLGIEATRALVAQEIKRVLEEQGLDVDIRHMYLVADAMTWSGRL 313
Query: 207 EPMSRKGMEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
P+ R G+ S SPL + +FE ++ L +A + + + + ++ G+ GTG+
Sbjct: 314 RPIGRHGVVGSKESPLARAAFEVTVKTLIEASVRGEDELFKGVVESIIAGKYVPIGTGIV 373
Query: 384 DL 389
L
Sbjct: 374 RL 375
>UniRef50_Q9BMP2 Cluster: DNA-directed RNA polymerase; n=2;
Stylonychia|Rep: DNA-directed RNA polymerase -
Stylonychia mytilus
Length = 1678
Score = 81.4 bits (192), Expect = 2e-14
Identities = 42/122 (34%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
++ + SNDI + GIEA +I E++ V + YGI V+ RHL+ + D MT GI
Sbjct: 1236 INYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQRGIL 1295
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ SSPL++ SFE ++ L +A + ++ D L+ + +++G+L GTG F
Sbjct: 1296 TAITRHGINRVDSSPLRKCSFEETVEILLEAAVFAETDPLKGITENIIMGQLAPFGTGCF 1355
Query: 384 DL 389
++
Sbjct: 1356 EI 1357
>UniRef50_Q7YYV9 Cluster: DNA-directed RNA polymerase; n=3;
Cryptosporidium|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum
Length = 1907
Score = 81.4 bits (192), Expect = 2e-14
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN + + GIEAA KVII+E+Q + Y + +D RH+ L+AD MT+ G +SR G
Sbjct: 1750 SNHVMEVREVLGIEAARKVIIQEVQKCMDAYSMDIDLRHIQLLADIMTFRGDVLGISRFG 1809
Query: 228 ME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHS 398
++ +S L SFE + L +A ++ D + S C+++G+ + GTG FD+ ++
Sbjct: 1810 IQKMRTSTLMLASFEETNEHLFEAAFQNRVDPVFGVSECVIMGKPIKIGTGSFDILYN 1867
>UniRef50_Q4QEN2 Cluster: DNA-directed RNA polymerase I largest
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase I largest subunit, putative - Leishmania major
Length = 1809
Score = 80.6 bits (190), Expect = 4e-14
Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+ + + S DI M ++G+E+ + E++ +F Y +VD HLTLIAD T+ G++
Sbjct: 1674 IKLQKARSTDIRDMCTSFGVESGYTALFDELEKLFKRY--SVDYHHLTLIADAATHRGVW 1731
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
E + G+ + S+SPL QM+F SS FL A+ D+L S SS +MVG R GT +
Sbjct: 1732 ENYNFTGVISHSASPLFQMTFASSKRFLHTALTRGIGDELNSISSAIMVGERPRVGTAL 1790
>UniRef50_Q98RN1 Cluster: DNA-directed RNA polymerase; n=1; Guillardia
theta|Rep: DNA-directed RNA polymerase - Guillardia theta
(Cryptomonas phi)
Length = 1289
Score = 80.2 bits (189), Expect = 5e-14
Identities = 43/115 (37%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 39 RLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMS 218
+LY N+I+++ N GIEA+ ++I+ EI N F +GI D RH+ L+ADYMT+NG ++
Sbjct: 1174 KLYCNNINSIYNFLGIEASRELIVLEITNTFKSHGIFSDNRHVYLLADYMTFNGFIIGIN 1233
Query: 219 RKGMEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
R+G+ + S SFE ++ L +A LN K S ++ G GTG+
Sbjct: 1234 REGLTCNKESVFLLASFEKTMENLFNASLNHTKSKYIGVSDAIIFGNSIPIGTGL 1288
>UniRef50_Q5CUJ2 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cryptosporidium parvum Iowa II
Length = 1902
Score = 80.2 bits (189), Expect = 5e-14
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + + GIEA + +++E++ V + G V+ RHL L+ D MT G
Sbjct: 1395 IDSTRTISNDITEVFSVLGIEAVRRALLRELRTVISFDGSYVNYRHLALLCDNMTQKGHL 1454
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ PLQ+ SFE ++ L DA + + D L S +M+G+L GT F
Sbjct: 1455 MSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFGETDYLNGVSENVMLGQLAPYGTACF 1514
Query: 384 DL 389
D+
Sbjct: 1515 DV 1516
>UniRef50_A3AV59 Cluster: DNA-directed RNA polymerase; n=1; Oryza
sativa (japonica cultivar-group)|Rep: DNA-directed RNA
polymerase - Oryza sativa subsp. japonica (Rice)
Length = 1257
Score = 79.8 bits (188), Expect = 7e-14
Identities = 43/123 (34%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SN I + T GIEAA + II EIQ +G+ +D RH+ L+AD MTY G
Sbjct: 1117 VDAMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEI 1176
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + SS L SFE + L +A + ++D + S C+++G + GTG+
Sbjct: 1177 LGITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGIL 1236
Query: 384 DLQ 392
++
Sbjct: 1237 KVR 1239
>UniRef50_P04051 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=9; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1460
Score = 79.8 bits (188), Expect = 7e-14
Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = +3
Query: 36 NRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPM 215
+R +N + + + GIEAA II+EI + +G++VDPRH+ L+ D MTY G +
Sbjct: 1312 SRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGI 1371
Query: 216 SRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+R G+ + S LQ SFE + L DA KKD + S C+++G+ GTG F
Sbjct: 1372 TRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSF 1428
>UniRef50_A7AP17 Cluster: RNA polymerase Rpb1, domain containing
protein; n=1; Babesia bovis|Rep: RNA polymerase Rpb1,
domain containing protein - Babesia bovis
Length = 1541
Score = 79.4 bits (187), Expect = 9e-14
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN + +A GIEAA VII EIQ + Y I +D R++ L+ D MT+ G ++R G
Sbjct: 1418 SNHVLEVAKVLGIEAARSVIISEIQKCMDAYSIDIDQRYMKLLGDVMTFRGEVIGINRFG 1477
Query: 228 ME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
++ +S L SFE + L +A ++ +D ++ S C+++G+ GTG FD+
Sbjct: 1478 IQKMRASTLMLASFEETNEHLFEAAVHRLRDPIKGVSECIIMGKQVPLGTGAFDV 1532
>UniRef50_P15354 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Halobacterium salinarium (Halobacterium
halobium)
Length = 397
Score = 79.4 bits (187), Expect = 9e-14
Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGIT-VDPRHLTLIADYMTYNGI 203
+D R N+IH + T GIEAA + II E G+ V+ RHL L+AD MT +G
Sbjct: 266 VDATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGT 325
Query: 204 FEPMSRKGMEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
E + R G+ + +S L + +FE ++ L DA ++ + DDL ++VG+ R GTG
Sbjct: 326 IESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVGKPVRLGTGD 385
Query: 381 FDLQ 392
DL+
Sbjct: 386 VDLR 389
>UniRef50_Q3SE62 Cluster: DNA-directed RNA polymerase; n=3; Paramecium
tetraurelia|Rep: DNA-directed RNA polymerase - Paramecium
tetraurelia
Length = 1368
Score = 79.0 bits (186), Expect = 1e-13
Identities = 40/122 (32%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN I + + GIEAA + I+ E+ + I++D RH+ L+A+ MT+ G
Sbjct: 1223 IDWKRTVSNHIMEIQSALGIEAARQSIVNEVYTTMQSHSISIDIRHILLLAELMTFKGRI 1282
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+R+G+ + +S L SFE ++ +A + K+D + AS +++G+ GTG+F
Sbjct: 1283 LGFTRQGIDQLKNSALMLASFEKTMDVFFNAAIQGKQDSMNGASQRVIIGQNVPQGTGMF 1342
Query: 384 DL 389
DL
Sbjct: 1343 DL 1344
>UniRef50_O77165 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Breviata
anathema
Length = 1690
Score = 79.0 bits (186), Expect = 1e-13
Identities = 41/122 (33%), Positives = 70/122 (57%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +N I + + G+EAA ++KE+++V G ++ RHL ++ D MT+ G
Sbjct: 1281 VDPYRTTTNSITVINDVLGVEAARAALLKELRDVLGFDGSYINIRHLLMLVDVMTFRGYL 1340
Query: 207 EPMSRKGMEASSSP-LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R GM + + L + SFE ++ L+DA + D+LR S +M+G++ GTG F
Sbjct: 1341 MSITRFGMNRTDNGILMRASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGTGTF 1400
Query: 384 DL 389
DL
Sbjct: 1401 DL 1402
>UniRef50_Q03586 Cluster: DNA-directed RNA polymerase subunit A'';
n=6; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit A'' - Thermoplasma acidophilum
Length = 508
Score = 78.6 bits (185), Expect = 2e-13
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R Y+NDI +AN GIEAA I+ E G+ VD RHL L+AD MT++G
Sbjct: 377 VDPTRTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFSGSV 436
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+ R G+ SS L + +FE + L A + + D L + ++VG+ GTG
Sbjct: 437 RAVGRTGISGRKSSVLARAAFEITTKHLLRAGIMGEVDKLAGVAENIIVGQPITLGTGAV 496
Query: 384 DL 389
D+
Sbjct: 497 DI 498
>UniRef50_O14802 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=17; Bilateria|Rep: DNA-directed RNA polymerase
III subunit RPC1 - Homo sapiens (Human)
Length = 1391
Score = 78.2 bits (184), Expect = 2e-13
Identities = 47/127 (37%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNV-YGITVDPRHLTLIADYMTYN 197
H + R SN+ + + T GIEAA II EIQ V +G+++D RH+ L++D MTY
Sbjct: 1239 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVVNHGMSIDRRHVMLLSDLMTYK 1298
Query: 198 GIFEPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
G ++R G+ + S L SFE + L DA +KD + S C+++G GT
Sbjct: 1299 GEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMGIPMNIGT 1358
Query: 375 GVFDLQH 395
G+F L H
Sbjct: 1359 GLFKLLH 1365
>UniRef50_Q54ZZ2 Cluster: DNA-directed RNA polymerase; n=2;
Dictyostelium discoideum|Rep: DNA-directed RNA polymerase
- Dictyostelium discoideum AX4
Length = 1450
Score = 77.8 bits (183), Expect = 3e-13
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN I NT GIE A I+ EI + +G+++D RH+ L+AD M++ G ++R G
Sbjct: 1318 SNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFG 1377
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S L SFE + L DA ++ ++DD+ S C+++G + GTG+F L
Sbjct: 1378 IAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKL 1432
>UniRef50_Q8SRM3 Cluster: DNA-directed RNA polymerase; n=1;
Encephalitozoon cuniculi|Rep: DNA-directed RNA polymerase
- Encephalitozoon cuniculi
Length = 1349
Score = 77.8 bits (183), Expect = 3e-13
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN I + GIEAA II EI+ + +GI +DPRH+ L+AD MTY G ++R G
Sbjct: 1229 SNSITEVEEVLGIEAARAQIIHEIEYTISNHGIKIDPRHIMLLADTMTYRGEVFGITRFG 1288
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S S L SFE + +L +A + SK D++ S +++G GTG DL
Sbjct: 1289 ISKMSRSTLMLASFEQTSDYLFEAAVQSKSDEICGVSESIILGIPICIGTGSMDL 1343
>UniRef50_P24928 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=473; cellular organisms|Rep: DNA-directed RNA
polymerase II subunit RPB1 - Homo sapiens (Human)
Length = 1970
Score = 77.8 bits (183), Expect = 3e-13
Identities = 43/122 (35%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K + +E+ +V + G V+ RHL L+ D MT G
Sbjct: 1352 VDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHL 1411
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + PL + SFE ++ L +A + + D ++ S +M+G+L GTG F
Sbjct: 1412 MAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCF 1471
Query: 384 DL 389
DL
Sbjct: 1472 DL 1473
>UniRef50_Q8MX30 Cluster: DNA-directed RNA polymerase; n=1; Naegleria
gruberi|Rep: DNA-directed RNA polymerase - Naegleria
gruberi
Length = 1590
Score = 77.4 bits (182), Expect = 4e-13
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SND++ + + GIEA +++E++ V G V+ RHL ++ D MT+ G ++R+G
Sbjct: 1314 SNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRRG 1373
Query: 228 MEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ S + PL + SFE ++ L +A + D L+ S+ +MVG+L GTG F L
Sbjct: 1374 INRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGL 1428
>UniRef50_Q22M85 Cluster: DNA-directed RNA polymerase; n=1;
Tetrahymena thermophila SB210|Rep: DNA-directed RNA
polymerase - Tetrahymena thermophila SB210
Length = 1418
Score = 77.4 bits (182), Expect = 4e-13
Identities = 43/126 (34%), Positives = 64/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D S DI + G+EAA K II EI + + VD RHL L+AD +T G
Sbjct: 1267 VDFANTLSVDIFEVLQILGVEAARKTIINEITKTIKSHSLNVDRRHLILVADVLTSKGRL 1326
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+R+G+ + S L SFE + L +A L +KD L S +++G+ GTG F
Sbjct: 1327 HGSTRQGINSMKDSTLMLASFEKTTEILYNAALQGRKDTLEGVSERIIIGQNIPMGTGTF 1386
Query: 384 DLQHSH 401
+L + +
Sbjct: 1387 NLLYGN 1392
>UniRef50_Q18EX7 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Haloquadratum walsbyi DSM 16790|Rep: DNA-directed
RNA polymerase subunit A'' - Haloquadratum walsbyi
(strain DSM 16790)
Length = 637
Score = 77.4 bits (182), Expect = 4e-13
Identities = 46/124 (37%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGIT-VDPRHLTLIADYMTYNGI 203
+D +R SN+IH + GIEAA + II E G+ V+ RHL L+AD MT G
Sbjct: 491 VDASRTTSNNIHEVHRNLGIEAARESIINETMETLREQGLDDVNVRHLMLVADIMTNRGE 550
Query: 204 FEPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
E + R G+ S S L + +FE ++ L DA ++ ++DDL ++VG+ GTG
Sbjct: 551 IESIGRHGISGSKDSVLARAAFEVTVNHLLDAAVHGEEDDLEGVIENVIVGKPVAIGTGD 610
Query: 381 FDLQ 392
DL+
Sbjct: 611 VDLR 614
>UniRef50_P08968 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Trypanosoma brucei brucei
Length = 1530
Score = 77.4 bits (182), Expect = 4e-13
Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R+ N + + GIEAA +VI+ EIQN+ Y +++D RH+ L+AD MT G+
Sbjct: 1362 VDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHVYLLADLMTQRGVV 1421
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G++ + + L SFE + L +A + D S S ++VG+ GT F
Sbjct: 1422 LGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDLSVSDSIIVGKPVPLGTTSF 1481
Query: 384 DL 389
DL
Sbjct: 1482 DL 1483
>UniRef50_Q7RXJ6 Cluster: DNA-directed RNA polymerase; n=4; root|Rep:
DNA-directed RNA polymerase - Neurospora crassa
Length = 1533
Score = 77.0 bits (181), Expect = 5e-13
Identities = 46/115 (40%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN I + GIEAA I KEI +V GI DPRH+ L+AD MTY G ++R G
Sbjct: 1355 SNSIMECRDVLGIEAARTTIAKEIGSVMGDMGI--DPRHMDLLADVMTYKGEILGITRHG 1412
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S LQ SFE + L DA K D + S C+++G+ + GTG F +
Sbjct: 1413 LAKMRDSVLQLASFERTPDHLFDAAAGMKTDRILGVSECIIMGQTMKIGTGAFQV 1467
>UniRef50_Q9LVH0 Cluster: DNA-directed RNA polymerase; n=11;
Euphyllophyta|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1383
Score = 76.2 bits (179), Expect = 9e-13
Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 1/112 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN++ ++ T GIEAA II EI V +G+++D RH+ L+AD MTY G + R G
Sbjct: 1250 SNNVVEVSKTLGIEAARTTIIDEIGTVMGNHGMSIDIRHMMLLADVMTYRGEVLGIQRTG 1309
Query: 228 ME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
++ S L Q SFE + L A + K D++ + C+++G + GTG+
Sbjct: 1310 IQKMDKSVLMQASFERTGDHLFSAAASGKVDNIEGVTECVIMGIPMKLGTGI 1361
>UniRef50_Q9YAU2 Cluster: DNA-directed RNA polymerase subunit A'';
n=19; Archaea|Rep: DNA-directed RNA polymerase subunit
A'' - Aeropyrum pernix
Length = 407
Score = 76.2 bits (179), Expect = 9e-13
Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI +A GIEAA II+EI+ V G+ VD RHL LIAD MT+ G
Sbjct: 279 VDHRRSISNDIQEIAQVLGIEAARTAIIEEIKRVLEDSGLDVDIRHLMLIADLMTWPGYV 338
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+ R G+ SPL + +FE ++ L +A + ++++ + ++ G R GTG
Sbjct: 339 RQIGRLGVVGEKPSPLARAAFEVTVKQLYEAAVWGEEEEFAGVTENIIAGLPPRVGTG 396
>UniRef50_P17545 Cluster: DNA-directed RNA polymerase II subunit
RPB1-B; n=60; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit RPB1-B - Trypanosoma brucei brucei
Length = 1766
Score = 76.2 bits (179), Expect = 9e-13
Identities = 39/125 (31%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
++++ + SN + + + GIEAA ++ E++ + YG+ ++ RH T++ D + +G
Sbjct: 1346 NIINAVKTSSNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHG 1405
Query: 201 IFEPMSRKGMEAS--SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
+SR G+ S S PL + SFE ++ L A + D +R S+ L++G R GT
Sbjct: 1406 YLMAVSRSGINRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGT 1465
Query: 375 GVFDL 389
G+FDL
Sbjct: 1466 GLFDL 1470
>UniRef50_A6SCV1 Cluster: DNA-directed RNA polymerase; n=19;
Fungi/Metazoa group|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1468
Score = 75.8 bits (178), Expect = 1e-12
Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D ++ SN + M + GIEAA I EI V + + +DPRH+ L+AD MTY G
Sbjct: 1311 VDGTKVKSNSVMEMRDVLGIEAARSTIANEIATV--MADMDIDPRHMQLLADVMTYKGEV 1368
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + S LQ SFE + L DA K D + S C+++G+ GTG F
Sbjct: 1369 LGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKTDRIEGVSECIIMGQTMGVGTGAF 1428
>UniRef50_A1RWW4 Cluster: DNA-directed RNA polymerase, subunit A'';
n=1; Thermofilum pendens Hrk 5|Rep: DNA-directed RNA
polymerase, subunit A'' - Thermofilum pendens (strain
Hrk 5)
Length = 403
Score = 75.8 bits (178), Expect = 1e-12
Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 2/131 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +N+I + GIEAA IIKEI+ V + +G+ VD RH+ ++AD MTY+G
Sbjct: 266 VDPRRTTTNNILEIYEVLGIEAARAAIIKEIKKVLDEHGLDVDWRHIMMVADAMTYSGKV 325
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVG-RLCRTGTGV 380
+ R G+ S L + SFE ++ L +A L + D+LR +++G + GTG
Sbjct: 326 RQVGRHGVAGEKGSVLARASFEVTVKNLVEAALRGELDELRGVIENVIIGSKPIPLGTGS 385
Query: 381 FDLQHSHLYGK 413
L+ + +G+
Sbjct: 386 VKLKMRYEFGQ 396
>UniRef50_Q9AVW8 Cluster: DNA-directed RNA polymerase II largest
chain; n=1; Guillardia theta|Rep: DNA-directed RNA
polymerase II largest chain - Guillardia theta
(Cryptomonas phi)
Length = 1473
Score = 75.4 bits (177), Expect = 1e-12
Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
+ YN + D +R +ND+ GIEA K++I+E++N+ + G V+ RHL + D
Sbjct: 1342 VMNYNGI-DYSRCTTNDLLESLKVLGIEATRKILIQELRNLISFDGSYVNYRHLCTLVDL 1400
Query: 186 MTYNGIFEPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
+T+ G ++R G+ + +S P+ + +FE ++ ++ + D+LR S+ +M G +
Sbjct: 1401 ITFRGSLMSINRHGINKCNSGPIAKSTFEETVDIFYESAVFGLNDNLRGVSAQIMTGMVP 1460
Query: 363 RTGTGVFDL 389
+ GTG DL
Sbjct: 1461 KIGTGKIDL 1469
>UniRef50_Q010D7 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase - Ostreococcus
tauri
Length = 1673
Score = 75.4 bits (177), Expect = 1e-12
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN + + GIEA +++E++ V G V+ RHL ++ + MTY G
Sbjct: 1338 VDFTRTTSNHLIEVIQILGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHL 1397
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ A + L + SFE ++ L +A S++D++ S +M+G+ C GTG F
Sbjct: 1398 VSITRHGINRAETGALMRCSFEETVDILMEAAAFSERDNMTGPSENIMLGQFCPIGTGEF 1457
Query: 384 DL 389
L
Sbjct: 1458 KL 1459
>UniRef50_A5ATH2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 814
Score = 75.4 bits (177), Expect = 1e-12
Identities = 36/96 (37%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Frame = +3
Query: 30 DMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFE 209
D+ +YSN++HAM NTYG+EA IKE+ N+ N YG+ + H + I D+M ++ ++
Sbjct: 635 DVRYIYSNNVHAMLNTYGVEATRATXIKEVFNISNAYGVKDNIHHXSEIVDFMIHSDGYQ 694
Query: 210 PMSRK-GMEASSSPLQQMSFE-SSLLFLKDAILNSK 311
PM+R G+ S S +M+FE +S ++D ++ K
Sbjct: 695 PMNRHGGITESVSLFNKMTFEIASKFIVQDGWIDGK 730
>UniRef50_Q9AXN0 Cluster: DNA-directed RNA polymerase; n=4;
Eukaryota|Rep: DNA-directed RNA polymerase -
Glaucosphaera vacuolata
Length = 1746
Score = 74.9 bits (176), Expect = 2e-12
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SND+ M T GIE ++ EI+ V + G V+ RHL ++AD MT G
Sbjct: 1348 VDYTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHI 1407
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + L + SFE + L +A + + DD++ + +M+G++ GTG F
Sbjct: 1408 MSITRHGINRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEF 1467
Query: 384 DL 389
L
Sbjct: 1468 GL 1469
>UniRef50_O94666 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Dikarya|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Schizosaccharomyces pombe (Fission yeast)
Length = 1405
Score = 74.9 bits (176), Expect = 2e-12
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
+N + M + GIEAA II EI +G+TVDPRH+ L+ D MT G ++R G
Sbjct: 1262 TNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFG 1321
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S L SFE + L +A KD + S C+++G+L GT VF L
Sbjct: 1322 VAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQL 1376
>UniRef50_A5DCV3 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=193; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 1579
Score = 74.9 bits (176), Expect = 2e-12
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R YSN+ + + GIEA + KEI NV G V+ RH+ L+ D MT G
Sbjct: 1156 VDAKRTYSNNFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHL 1215
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ A + L + SFE ++ L +A ++ DD S +++G+L GTG F
Sbjct: 1216 MAITRHGINRADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAF 1275
Query: 384 DL 389
D+
Sbjct: 1276 DV 1277
>UniRef50_Q8SSC4 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=15; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Encephalitozoon cuniculi
Length = 1599
Score = 74.9 bits (176), Expect = 2e-12
Identities = 42/115 (36%), Positives = 70/115 (60%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SND+ +A T GIEAA + I++E+ V + G V+ RH++L+AD MT G ++R G
Sbjct: 1292 SNDLVEIAETLGIEAARESILRELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHG 1351
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + + L++ SFE ++ L DA L S+K+ R + +M+G+L GTG ++
Sbjct: 1352 VNKVGAGALKRSSFEETVEILLDAALVSEKNICRGITENIMMGQLAPMGTGNIEI 1406
>UniRef50_O28390 Cluster: DNA-directed RNA polymerase subunit A'';
n=7; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit A'' - Archaeoglobus fulgidus
Length = 380
Score = 74.5 bits (175), Expect = 3e-12
Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +N+I+ + GIEAA II+E + G+ VD RH+ L+AD MT +G
Sbjct: 251 VDFTRTTTNNIYEIYEVLGIEAARNAIIREALDTLEEQGLEVDVRHIMLVADVMTADGEL 310
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+ R G+ S L + +FE ++ L DA + ++D LR + ++VG+ + GTG
Sbjct: 311 RQIGRHGVAGEKQSILARAAFEMTVNNLLDAAVRGEEDHLRGITENIIVGQPIKLGTGDV 370
Query: 384 DL 389
+L
Sbjct: 371 EL 372
>UniRef50_Q7T6X5 Cluster: DNA-directed RNA polymerase subunit 1; n=1;
Acanthamoeba polyphaga mimivirus|Rep: DNA-directed RNA
polymerase subunit 1 - Mimivirus
Length = 1495
Score = 74.5 bits (175), Expect = 3e-12
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D+ R NDI + YG+EAA IKE G + +H+ ++AD +T+ G
Sbjct: 1334 IDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHMGGL 1393
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
P++R G + + P + SFE ++ L A + + D +RS S+ +MVG L GTG F
Sbjct: 1394 IPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGTGCF 1453
Query: 384 DLQHSH 401
DL H
Sbjct: 1454 DLLLDH 1459
>UniRef50_P04050 Cluster: DNA-directed RNA polymerase II subunit RPB1;
n=225; Eukaryota|Rep: DNA-directed RNA polymerase II
subunit RPB1 - Saccharomyces cerevisiae (Baker's yeast)
Length = 1733
Score = 74.5 bits (175), Expect = 3e-12
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R+Y+N + GIEA + KE+ NV G V+ RH+ L+ D MT G
Sbjct: 1322 IDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGL 1381
Query: 207 EPMSRKGMEASSS-PLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G S++ L + SFE ++ L +A +++ DD R S +++G++ GTG F
Sbjct: 1382 TSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAF 1441
Query: 384 DL 389
D+
Sbjct: 1442 DV 1443
>UniRef50_P29158 Cluster: DNA-directed RNA polymerase subunit A'';
n=1; Thermococcus celer|Rep: DNA-directed RNA polymerase
subunit A'' - Thermococcus celer
Length = 393
Score = 74.1 bits (174), Expect = 3e-12
Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +NDI +A GIEAA II EI G+ VD RH+ L+AD MT +G+
Sbjct: 261 VDPTRTRTNDIREIAEVLGIEAARNAIIDEILKTMEEQGLEVDVRHIMLVADMMTLDGVI 320
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
P+ R G+ +S L + +FE + L +A D L +++G+ GTG
Sbjct: 321 RPIGRHGIVGEKASVLARAAFEITTQHLFEAAERGAVDPLNGVVENVLIGQPVPVGTGTV 380
Query: 384 DL 389
L
Sbjct: 381 KL 382
>UniRef50_Q8PUR2 Cluster: DNA-directed RNA polymerase subunit A'';
n=3; Methanosarcina|Rep: DNA-directed RNA polymerase
subunit A'' - Methanosarcina mazei (Methanosarcina
frisia)
Length = 408
Score = 73.7 bits (173), Expect = 5e-12
Identities = 41/118 (34%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +N+I+ + GIEAA IIKE + G+TVD RH+ L+AD MT +G
Sbjct: 261 VDRTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDGEV 320
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+ + R G+ +S + +FE ++ L DA + D L+ + ++VG+ R GTG
Sbjct: 321 KQIGRHGISGEKASVFARAAFEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTG 378
>UniRef50_A3BPR9 Cluster: DNA-directed RNA polymerase; n=7;
Magnoliophyta|Rep: DNA-directed RNA polymerase - Oryza
sativa subsp. japonica (Rice)
Length = 1507
Score = 73.3 bits (172), Expect = 6e-12
Identities = 39/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN + + GIEA + ++ E++ V + G V+ RHL ++ D MTY G
Sbjct: 994 VDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1053
Query: 207 EPMSRKGMEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
++R G+ + + PL + SFE ++ L DA + ++ D LR + +M+G+L GTG
Sbjct: 1054 MAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIGTG 1111
>UniRef50_Q3LWE3 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1510
Score = 72.9 bits (171), Expect = 8e-12
Identities = 39/136 (28%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + Y ND++ + +GIEAA + IKE++ + ++ H++ +ADY T G
Sbjct: 1327 IDSSLTYCNDVNCFYDNFGIEAARLLFIKELKKILEFDNSYINQHHISCLADYSTNTGRP 1386
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G++ S S LQ+ SFE ++ L A + +K D S + ++ G+ GTG
Sbjct: 1387 NAINRYGLKVQSLSTLQECSFEETMKTLLKASVETKVDRFSSITETIIFGKESNFGTGFS 1446
Query: 384 DLQHSHLYGKVNLSKS 431
+++ + + +V +SK+
Sbjct: 1447 NMKKTK-FQEVQISKN 1461
>UniRef50_P25202 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=2; Giardia intestinalis|Rep: DNA-directed RNA
polymerase III subunit RPC1 - Giardia lamblia (Giardia
intestinalis)
Length = 1741
Score = 72.9 bits (171), Expect = 8e-12
Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN+I +ANT GIEAA I EI+ + +G+ VD RH+ L+AD M + G
Sbjct: 1531 IDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRV 1590
Query: 207 EPMSRKGME--ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
+R G+ + S + SFE + L +A L +K D+ + +++G+ GTG
Sbjct: 1591 LGFTRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGS 1650
Query: 381 FDL 389
F L
Sbjct: 1651 FSL 1653
>UniRef50_Q58446 Cluster: DNA-directed RNA polymerase subunit A'' (EC
2.7.7.6) [Contains: Mja rpoA2 intein (Mja rpol A''
intein)]; n=7; Methanococcales|Rep: DNA-directed RNA
polymerase subunit A'' (EC 2.7.7.6) [Contains: Mja rpoA2
intein (Mja rpol A'' intein)] - Methanococcus jannaschii
Length = 859
Score = 72.5 bits (170), Expect = 1e-11
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 1/130 (0%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
++FK + + D R +N+I + GIEAA II E++N G+ VD RHL L+AD
Sbjct: 717 EVFKIDGV-DTTRTITNNIIEIQEVLGIEAARNAIINEMRNTLEQQGLEVDIRHLMLVAD 775
Query: 183 YMTYNGIFEPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRL 359
MT +G +P+ R G+ S L + +FE ++ L A D L+ ++VG+
Sbjct: 776 IMTADGEVKPIGRHGVAGEKGSVLARAAFEETVKHLYAAAERGDVDKLKGVIENVIVGKP 835
Query: 360 CRTGTGVFDL 389
GTG +L
Sbjct: 836 IYLGTGCVEL 845
>UniRef50_A2DEX5 Cluster: DNA-directed RNA polymerase; n=1;
Trichomonas vaginalis G3|Rep: DNA-directed RNA polymerase
- Trichomonas vaginalis G3
Length = 1657
Score = 72.1 bits (169), Expect = 1e-11
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN + + G+EAA VII EI NV Y + +D RHL L++D MT G
Sbjct: 1211 IDPKRTVSNHVLDVEKVLGVEAARSVIISEITNVMKNYSLNIDRRHLMLLSDLMTIRGKV 1270
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + S S L+ SFE++ L +A ++ + S+ +++G G+G+
Sbjct: 1271 LGVTRHGLAKTSVSSLKLASFETTQEHLFNAAFHNVDEVANGVSASVILGNFAPIGSGMI 1330
Query: 384 DL 389
D+
Sbjct: 1331 DV 1332
>UniRef50_Q84KP6 Cluster: DNA-directed RNA polymerase; n=3;
Eukaryota|Rep: DNA-directed RNA polymerase -
Cyanidioschyzon merolae (Red alga)
Length = 1819
Score = 71.7 bits (168), Expect = 2e-11
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SN+I + GIEAA + + E+ V + G +V RHL L+ + MT G+
Sbjct: 1372 VDARRTISNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHLALLVEVMTCRGML 1431
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
P+SR G+ + PL + +FE ++ L A +D S +++G+ + GTG F
Sbjct: 1432 IPVSRFGINRLETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAF 1491
Query: 384 DL 389
L
Sbjct: 1492 SL 1493
>UniRef50_A5K7T9 Cluster: DNA-directed RNA polymerase; n=1; Plasmodium
vivax|Rep: DNA-directed RNA polymerase - Plasmodium vivax
Length = 1946
Score = 71.3 bits (167), Expect = 2e-11
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 1/130 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SN + + GIEAA II EI+ Y I +D RH+ L+AD M + G
Sbjct: 1801 VDFKHIISNHVINVFQVLGIEAARVTIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDI 1860
Query: 207 EPMSRKGME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G++ A S L SFE + L + +D++ + S ++VG+ GTG F
Sbjct: 1861 LGINRFGIQKARHSTLMLASFEETNEHLFVSSFFKNRDEINNISESIIVGKNIPIGTGAF 1920
Query: 384 DLQHSHLYGK 413
L + + + +
Sbjct: 1921 QLLYDYKFNR 1930
>UniRef50_A6SJ73 Cluster: DNA-directed RNA polymerase; n=2;
Sclerotiniaceae|Rep: DNA-directed RNA polymerase -
Botryotinia fuckeliana B05.10
Length = 1774
Score = 70.9 bits (166), Expect = 3e-11
Identities = 32/69 (46%), Positives = 45/69 (65%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADY 185
M Y ++ N++ +NDI AM YG+EA I++E+ +VF+ + I VD RHL LIADY
Sbjct: 1546 MQNYAAFINPNKISTNDIAAMLENYGVEACRSTIVQELHSVFDGHAIAVDMRHLKLIADY 1605
Query: 186 MTYNGIFEP 212
MT +G F P
Sbjct: 1606 MTQSGGFSP 1614
>UniRef50_O27126 Cluster: DNA-directed RNA polymerase subunit A'';
n=4; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit A'' - Methanobacterium
thermoautotrophicum
Length = 451
Score = 70.9 bits (166), Expect = 3e-11
Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R +NDIH + GIEAA II E + G+TVD RH+ L+AD MT +G
Sbjct: 324 VDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSV 383
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+ + R G+ +S L + SFE + L A + + D L +++G+ GTG
Sbjct: 384 KSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTG 441
>UniRef50_Q27095 Cluster: DNA-directed RNA polymerase; n=2;
Trichomonas vaginalis|Rep: DNA-directed RNA polymerase -
Trichomonas vaginalis
Length = 1661
Score = 70.1 bits (164), Expect = 6e-11
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D +NDI+ + + GIEAA + E+ + G ++ RHL L+AD MT G+
Sbjct: 1339 VDTVHTITNDIYQVCDVLGIEAARHSLSYEMMLIMEKAGAALNRRHLDLLADTMTQYGVL 1398
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
P+SR G+ + + L + S+E + DA + S+ D +R SS ++ G+ R GTG+
Sbjct: 1399 YPVSRHGINKTPTGTLMRASYEMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGIV 1458
Query: 384 DL 389
++
Sbjct: 1459 EV 1460
>UniRef50_Q0V3B7 Cluster: DNA-directed RNA polymerase; n=2;
Ascomycota|Rep: DNA-directed RNA polymerase -
Phaeosphaeria nodorum (Septoria nodorum)
Length = 1467
Score = 69.3 bits (162), Expect = 1e-10
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
SN + + GIEAA I++EI V + +DPRH+ L+AD MT+ G ++R G
Sbjct: 1330 SNHVMEVRTVLGIEAARATIMREISAVMG--NMDIDPRHMALLADVMTFKGDVYGITRFG 1387
Query: 228 MEAS-SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHL 404
++ + S LQ SFE + L +A K D + S +++G+ + GTG +
Sbjct: 1388 LQKTRDSVLQLASFEKTPDHLFEAAARGKTDTIDGVSESIIMGQSMKLGTGALQVVRPLK 1447
Query: 405 YGKVNLSK 428
G+ +L+K
Sbjct: 1448 LGEEDLAK 1455
>UniRef50_O96452 Cluster: DNA-directed RNA polymerase; n=1;
Antonospora locustae|Rep: DNA-directed RNA polymerase -
Antonospora locustae (Nosema locustae)
Length = 1553
Score = 69.3 bits (162), Expect = 1e-10
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Frame = +3
Query: 36 NRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPM 215
N++Y ND+ + GIEA + I++E++NV G V+ RHL L+ D MT G+ +
Sbjct: 1261 NKVYCNDLLEVYEVLGIEAVRECILRELRNVIEAEGSYVNFRHLYLLCDVMTLKGL-RGI 1319
Query: 216 SRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+R G A++ L++ SFE ++ L +A ++++ R + +M+G+L GTG
Sbjct: 1320 TRHGANRAATGALKRCSFEETVEILLEASCFAERNYCRGVTENIMLGQLAPIGTG 1374
>UniRef50_Q8TXI9 Cluster: DNA-directed RNA polymerase largest
subunit, the N-terminal part; n=1; Methanopyrus
kandleri|Rep: DNA-directed RNA polymerase largest
subunit, the N-terminal part - Methanopyrus kandleri
Length = 429
Score = 69.3 bits (162), Expect = 1e-10
Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R+ +ND + G+EA II++++ V+ GI+VDPRH LI+D M++ G
Sbjct: 289 VDATRVNTNDPKIVDVLLGVEAGRNAIIEQLEEVYESQGISVDPRHFMLISDMMSFWGEL 348
Query: 207 EPMSRKG----MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
+ G ME SPL + +FE L + + ++LR ++VG+ GT
Sbjct: 349 RSVRSVGGYSVMELKGSPLTKAAFEYVSRVLTETATSGDVEELRGVLENIIVGKPVPVGT 408
Query: 375 GVFDL 389
G +L
Sbjct: 409 GTVEL 413
>UniRef50_Q9VXP9 Cluster: DNA-directed RNA polymerase; n=4;
Diptera|Rep: DNA-directed RNA polymerase - Drosophila
melanogaster (Fruit fly)
Length = 1304
Score = 68.9 bits (161), Expect = 1e-10
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 39 RLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMS 218
R SN+I + T GIEAA +I+ EI V +G++VD RH+ L+A MT G ++
Sbjct: 1159 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1218
Query: 219 RKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 395
R G+ + S SFE + L DA + D + S +++G GTG+F L
Sbjct: 1219 RHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQ 1278
Query: 396 SH 401
H
Sbjct: 1279 QH 1280
>UniRef50_Q7RQQ6 Cluster: DNA-directed RNA polymerase; n=9; Plasmodium
(Vinckeia)|Rep: DNA-directed RNA polymerase - Plasmodium
yoelii yoelii
Length = 2020
Score = 68.9 bits (161), Expect = 1e-10
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 1/115 (0%)
Frame = +3
Query: 60 HAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGME-A 236
H A GIEAA II EI+ Y I +D RH+ L+AD M + G ++R G++ A
Sbjct: 1884 HIFAQVLGIEAARVTIINEIKKCIEAYSIDIDIRHIMLLADIMAFTGEILGINRFGIQKA 1943
Query: 237 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 401
S L SFE + L + D++ + S ++VG+ GTG F+L + +
Sbjct: 1944 RQSTLMLASFEETNEHLFVSSFFKNNDEINNISESIIVGKNIPIGTGSFELLYDY 1998
>UniRef50_Q4SF83 Cluster: DNA-directed RNA polymerase; n=1; Tetraodon
nigroviridis|Rep: DNA-directed RNA polymerase - Tetraodon
nigroviridis (Green puffer)
Length = 1745
Score = 68.5 bits (160), Expect = 2e-10
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Frame = +3
Query: 81 GIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSS-PLQQ 257
GIEA K + +E+ +V + G V+ RHL L+ D MT G ++R G+ + PL +
Sbjct: 1283 GIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMK 1342
Query: 258 MSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
SFE ++ L +A + + D ++ S +M+G+L GTG FDL
Sbjct: 1343 CSFEETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDL 1386
>UniRef50_P27625 Cluster: DNA-directed RNA polymerase III subunit
RPC1; n=6; Eukaryota|Rep: DNA-directed RNA polymerase III
subunit RPC1 - Plasmodium falciparum
Length = 2339
Score = 68.5 bits (160), Expect = 2e-10
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + SN + + GIEAA II EI+ Y I +D RH+ L+AD M + G
Sbjct: 2191 VDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDIRHIMLLADIMAFTGDI 2250
Query: 207 EPMSRKGME-ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G++ A S L SFE + L + D++ + S ++VG+ GTG F
Sbjct: 2251 LGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNISESIIVGKNIPIGTGAF 2310
Query: 384 DLQHSH 401
L + +
Sbjct: 2311 QLLYDY 2316
>UniRef50_Q1L5Y1 Cluster: DNA-directed RNA polymerase; n=1;
Ceratopteris thalictroides|Rep: DNA-directed RNA
polymerase - Ceratopteris thalictroides
Length = 836
Score = 68.1 bits (159), Expect = 2e-10
Identities = 45/142 (31%), Positives = 77/142 (54%), Gaps = 7/142 (4%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
H ++ R + I A+AN +GIEAA+ I ++++ +++ TV H+ +I + MT++G
Sbjct: 699 HKINWLRSMPSGIQAIANVFGIEAAHNCIYHRLKSILSMFDKTVYDHHVIVITELMTHSG 758
Query: 201 IFEPMSRKGM-EAS-----SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
++ G E S S+P+ Q F+SS+ ++ A L K DDL + + G+L
Sbjct: 759 NVIGLNAAGFREISNSLHISAPITQSLFQSSIKHIQTAALRGKCDDLSGTLAAICWGKLA 818
Query: 363 RTGTGV-FDLQHSHLYGKVNLS 425
GTG FD+ L+ KV L+
Sbjct: 819 PVGTGAKFDI----LWRKVELT 836
>UniRef50_A4GI99 Cluster: RpoA2 RNA polymerase subunit A''; n=1;
uncultured marine bacterium HF10_29C11|Rep: RpoA2 RNA
polymerase subunit A'' - uncultured marine bacterium
HF10_29C11
Length = 287
Score = 65.3 bits (152), Expect = 2e-09
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D +R Y+N+I + + GIEAA + II E+++ + VD RHL ++AD MT G
Sbjct: 160 IDRSRTYTNNIIEIFDYLGIEAARQAIINELESTLLSARLEVDVRHLLMVADVMTSEGEV 219
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+ R G+ + S L + +FE ++ L A + + D L + ++VG+ GTG
Sbjct: 220 RAIGRHGVSGTKHSILARAAFEVTVNHLLKAGIIGETDRLTGVAENIIVGQPISLGTGSV 279
Query: 384 DL 389
+L
Sbjct: 280 EL 281
>UniRef50_Q91FI1 Cluster: 343L; n=1; Invertebrate iridescent virus
6|Rep: 343L - Chilo iridescent virus (CIV) (Insect
iridescent virus type 6)
Length = 462
Score = 64.5 bits (150), Expect = 3e-09
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 1/123 (0%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
+ D+ + + I + NT+GIEA + +I+E++ V + VD H+ L+ + MTY+G
Sbjct: 312 IFDLTKTKTTSIWDLYNTFGIEATKQFLIQELKTVMD----GVDICHIKLLVERMTYSGT 367
Query: 204 FEPMSRKGMEASSSPLQQMSFESSL-LFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
EP++R M SPL + SFE S FLK A + + S+ ++ G+ GT +
Sbjct: 368 IEPITRYTMRNDESPLSRASFEESFETFLKAAKF-KEIEPFTGVSASVIGGKKTEVGTYM 426
Query: 381 FDL 389
D+
Sbjct: 427 CDI 429
>UniRef50_Q196X0 Cluster: DNA-directed RNA polymerase; n=1; Aedes
taeniorhynchus iridescent virus|Rep: DNA-directed RNA
polymerase - Aedes taeniorhynchus iridescent virus
Length = 1377
Score = 64.5 bits (150), Expect = 3e-09
Identities = 36/122 (29%), Positives = 64/122 (52%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D+ +N+I + +T GIEAA + IKE+ + G VD H+ L AD +T+ G
Sbjct: 1212 IDVEHTTTNNIWDIYHTLGIEAAREFRIKELVEII---GTGVDLSHIKLRADRLTFTGTI 1268
Query: 207 EPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD 386
+ ++R M P ++ FE + +++ DDL S+ +M G+ + GT +FD
Sbjct: 1269 QSLTRYTMRGEK-PFSKVGFEEIMENFYKTARDAEVDDLTGVSASIMCGKRAKVGTSMFD 1327
Query: 387 LQ 392
++
Sbjct: 1328 IK 1329
>UniRef50_Q7Z755 Cluster: POLR3A protein; n=5; Metazoa|Rep: POLR3A
protein - Homo sapiens (Human)
Length = 162
Score = 61.7 bits (143), Expect = 2e-08
Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
H + R SN+ + + T GIEAA II EIQ +G+++D RH+ L++D MTY G
Sbjct: 55 HGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKG 114
Query: 201 IFEPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDL 323
++R G+ + S L SFE + L DA +KD +
Sbjct: 115 EVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 156
>UniRef50_Q1L5X6 Cluster: DNA-directed RNA polymerase; n=2;
lamiids|Rep: DNA-directed RNA polymerase - Solanum
lycopersicum (Tomato) (Lycopersicon esculentum)
Length = 1138
Score = 60.5 bits (140), Expect = 5e-08
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
L+D R Y +D+H + YGI+ A + + ++ + + G + P HL L AD +T G
Sbjct: 827 LIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADSLTTTGE 886
Query: 204 FEPMSRKGMEASS------SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
F P+S KG+ SP Q F + A DDL+ + L G+
Sbjct: 887 FVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLAWGKTPS 946
Query: 366 TGTG-VFDLQHS 398
GTG FD+ +S
Sbjct: 947 IGTGSSFDIMYS 958
>UniRef50_UPI0000E46842 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: hypothetical protein, partial -
Strongylocentrotus purpuratus
Length = 428
Score = 58.0 bits (134), Expect = 2e-07
Identities = 23/37 (62%), Positives = 33/37 (89%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIK 113
+++K++ LLD+N+ Y+NDIH+MAN YGIEAA+K IIK
Sbjct: 374 ELYKHDKLLDLNKAYTNDIHSMANAYGIEAASKAIIK 410
>UniRef50_Q8MUU2 Cluster: DNA-directed RNA polymerase; n=4; Giardia
intestinalis|Rep: DNA-directed RNA polymerase - Giardia
lamblia (Giardia intestinalis)
Length = 2076
Score = 56.0 bits (129), Expect = 1e-06
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT---YN 197
+D R ++ ++ + GIEAA + IK+I+ + + + H ++AD M+ N
Sbjct: 1682 VDFTRTWTTNVREIYEILGIEAARALFIKQIRATLDKVDLNI--HHYLILADIMSSRPQN 1739
Query: 198 GIFEPMSRKGMEASSSP-LQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
++R GM+A+++ L Q +FE + A D L+S SSC+++G+ GT
Sbjct: 1740 NKMISINRYGMQATNTGVLAQATFERPGATVLKAAAFGVVDPLKSVSSCVVMGKQGDFGT 1799
Query: 375 GVFDL 389
G FDL
Sbjct: 1800 GCFDL 1804
>UniRef50_Q6IUR3 Cluster: DNA-directed RNA polymerase; n=3; Entamoeba
histolytica|Rep: DNA-directed RNA polymerase - Entamoeba
histolytica
Length = 1636
Score = 56.0 bits (129), Expect = 1e-06
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + +N+++ GIEA + E+ + + G V+ RHL L+AD MT+ G
Sbjct: 1353 VDFYKTVTNNVYETFLYLGIEAGRTQLEAEL--IKTLSGSYVNFRHLALMADVMTFTGRI 1410
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
+P +R G+ + + + SFE +L + A S+ D L S +++G+ GTG F
Sbjct: 1411 QPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTGAF 1470
>UniRef50_Q9LQ02 Cluster: DNA-directed RNA polymerase; n=1;
Arabidopsis thaliana|Rep: DNA-directed RNA polymerase -
Arabidopsis thaliana (Mouse-ear cress)
Length = 1453
Score = 55.6 bits (128), Expect = 1e-06
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
++D R + ++I + YGI+A + + +++ + G + HL L+AD ++ G
Sbjct: 1136 MIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGE 1195
Query: 204 FEPMSRKG------MEASSSPLQQMSFES-SLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
F ++ KG +E++ +P Q F S S FLK A +DDL+ + L G++
Sbjct: 1196 FVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLK-AAKEGVRDDLQGSIDALAWGKVP 1254
Query: 363 RTGTG 377
GTG
Sbjct: 1255 GFGTG 1259
>UniRef50_Q83066 Cluster: DNA-directed RNA polymerase; n=3;
Lymphocystivirus|Rep: DNA-directed RNA polymerase - Fish
lymphocystis disease virus (FLDV)
Length = 1199
Score = 54.8 bits (126), Expect = 2e-06
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Frame = +3
Query: 51 NDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM 230
+D+ + T G+ A K + + I+ G + P H+ L+ D MTY G P+ R M
Sbjct: 1076 DDVWDIYKTLGLAAVRKRLREMIKTCV---GEEIYPEHIQLLVDQMTYKGKPMPIDRYTM 1132
Query: 231 EASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLY 407
PL + +FE SL L ++ + + D L S+C++ G+ GTG L + Y
Sbjct: 1133 RTHQVGPLSRAAFEESLDILVNSAVIGETDTLNGVSACVIAGKKTFIGTGFPKLIYDPTY 1192
Query: 408 GK 413
K
Sbjct: 1193 LK 1194
>UniRef50_A7QKE4 Cluster: Chromosome chr2 scaffold_112, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_112, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 1360
Score = 54.8 bits (126), Expect = 2e-06
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
++D R + ++IH + YGI+A K + +++ + G TV P HL L+A ++ G
Sbjct: 1045 MIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGE 1104
Query: 204 FEPMSRKGM------EASSSPLQQMSFES-SLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
F ++ KGM + SSP Q F S F+K A + D+L + L G++
Sbjct: 1105 FVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIK-AGKRAVADNLHGSLDALAWGKIP 1163
Query: 363 RTGT-GVFDLQHS 398
G+ G FD+ +S
Sbjct: 1164 SVGSGGHFDILYS 1176
>UniRef50_P42486 Cluster: DNA-directed RNA polymerase subunit 1; n=1;
African swine fever virus BA71V|Rep: DNA-directed RNA
polymerase subunit 1 - African swine fever virus (strain
BA71V) (ASFV)
Length = 1450
Score = 54.4 bits (125), Expect = 3e-06
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + S+ I YGIEAA + II EI+ V G + RHL + AD MT G
Sbjct: 1309 IDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKG--PNHRHLLMYADLMTRTGQV 1366
Query: 207 EPMSRKGMEA--SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
+ + G+ A S+ L +M+ S + L DA ++S + + ++ ++G + R GT
Sbjct: 1367 TSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSVPRIGTMY 1426
Query: 381 FDL 389
D+
Sbjct: 1427 SDI 1429
>UniRef50_Q2N0X2 Cluster: RNA polymerase III large subunit; n=1;
Monosiga brevicollis|Rep: RNA polymerase III large
subunit - Monosiga brevicollis
Length = 233
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = +3
Query: 51 NDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGM 230
N + + T GIEAA +I+ ++Q V + YGI ++PRH L++D MT+ G ++R G+
Sbjct: 158 NHVMELEQTLGIEAARSIIMDQVQYVMSNYGIHINPRHTMLMSDLMTFKGEVLGITRFGI 217
Query: 231 -EASSSPLQQMSFESS 275
+ S SFE +
Sbjct: 218 AKMKESVFMLASFEKT 233
>UniRef50_Q23692 Cluster: RNA polymerase II, large subunit; n=1;
Crithidia fasciculata|Rep: RNA polymerase II, large
subunit - Crithidia fasciculata
Length = 295
Score = 52.0 bits (119), Expect = 2e-05
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Frame = +3
Query: 168 TLIADYMTYNGIFEPMSRKGMEAS--SSPLQQMSFESSLLFLKDAILNSKKDDLRSASSC 341
T++ D M G +SR G+ S S PL + SFE ++ L A +KD +R S+
Sbjct: 2 TILVDTMLPRGYLMAVSRTGINRSETSGPLMRSSFEETVKVLMTAAAFGEKDPVRGVSAN 61
Query: 342 LMVGRLCRTGTGVFDL 389
L++G R GTG+FDL
Sbjct: 62 LVLGNQARIGTGLFDL 77
>UniRef50_Q6YHB9 Cluster: DNA-directed RNA polymerase; n=5;
Ranavirus|Rep: DNA-directed RNA polymerase - Ambystoma
tigrinum stebbensi virus
Length = 1294
Score = 49.6 bits (113), Expect = 8e-05
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 1/128 (0%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
F + L D R+ ++D+ + T G+ AA K + + +F+ G + P H+ L+ D M
Sbjct: 1134 FLCHPLADWERVRTDDVWDVYETLGLAAAKKRLY---ELMFSCVGDNLYPAHIKLLTDRM 1190
Query: 189 TYNGIFEPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
G P+ R M PL + +FE SL L A ++ + A + + G R
Sbjct: 1191 MRRGRPTPIDRYTMRTCEVGPLSRAAFEESLDILTGAGCTAETEHCAGAGARVAAGLPVR 1250
Query: 366 TGTGVFDL 389
GTG L
Sbjct: 1251 AGTGYMGL 1258
>UniRef50_Q5YF58 Cluster: DNA-directed RNA polymerase; n=6;
Iridoviridae|Rep: DNA-directed RNA polymerase - Rock
bream iridovirus
Length = 1168
Score = 48.8 bits (111), Expect = 1e-04
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D++ N++ + G+ AA + + ++ G V H+ ++ D MT++G+
Sbjct: 1045 VDVDNTACNNVWDVYEAKGLIAAKRFLT---HSMVECLGDDVHMAHIRVLVDRMTFSGLP 1101
Query: 207 EPMSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
+ R M + + P+ + +FE SL L + + ++D+ +CL+ G++ GTG
Sbjct: 1102 TAVDRYTMRSCETGPISKATFEESLDILVSSAVRGERDNNTGVGACLVAGKMLPLGTG 1159
>UniRef50_Q06VH1 Cluster: RNA polymerase II; n=1; Trichoplusia ni
ascovirus 2c|Rep: RNA polymerase II - Trichoplusia ni
ascovirus 2c
Length = 453
Score = 48.0 bits (109), Expect = 3e-04
Identities = 30/109 (27%), Positives = 58/109 (53%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
+N + YGIE +II ++ N +V +TL+A+ +T++G EP +R
Sbjct: 284 TNRLRDAEQCYGIEVTKAIII-DMSNA--CLSESVPKAIITLMANRLTHSGHVEPFTRFT 340
Query: 228 MEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
M ++ SPL ++ FE L ++A L + + ++ SS ++ G + + G+
Sbjct: 341 MRSNISPLAKIGFEECLEGCRNAGLFKESERFKTVSSSIICGIMPKVGS 389
>UniRef50_A5BZZ3 Cluster: DNA-directed RNA polymerase; n=1; Vitis
vinifera|Rep: DNA-directed RNA polymerase - Vitis
vinifera (Grape)
Length = 1393
Score = 46.8 bits (106), Expect = 6e-04
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
++D R + ++IH + YGI+A K + +++ + G TV P HL L+A ++ G
Sbjct: 1291 MIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGE 1350
Query: 204 FEPMSRKGM 230
F ++ KGM
Sbjct: 1351 FVGLNAKGM 1359
>UniRef50_Q01JX0 Cluster: DNA-directed RNA polymerase; n=5; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
(Rice)
Length = 1407
Score = 43.6 bits (98), Expect = 0.006
Identities = 29/132 (21%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Frame = +3
Query: 24 LLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
L+D R ++ +YGI++A K ++ +++ + G + +HL ++AD ++ +G
Sbjct: 1090 LIDWERSRPERVYDNFCSYGIDSAWKFFVESLRSTTDAIGRNIHRQHLLVVADCLSVSGQ 1149
Query: 204 FEPMSRKGME------ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGR-LC 362
F +S +G++ + SSP + F +A D+L + G+ C
Sbjct: 1150 FHGLSSQGLKQQRTWLSISSPFSEACFSRPAHSFINAAKRDSVDNLSGTLDAIAWGKEPC 1209
Query: 363 RTGTGVFDLQHS 398
+G F + +S
Sbjct: 1210 TGSSGPFKILYS 1221
>UniRef50_Q5DD92 Cluster: SJCHGC09439 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC09439 protein - Schistosoma
japonicum (Blood fluke)
Length = 503
Score = 42.7 bits (96), Expect = 0.010
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +3
Query: 213 MSRKGMEA-SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
++R G+ + L + SFE ++ L +A ++S+ D + S +M+G+L R GTG FDL
Sbjct: 3 ITRHGLNRLDTGALARCSFEETVDILMEAAIHSEYDPMAGVSETIMLGQLARIGTGCFDL 62
>UniRef50_Q20EX3 Cluster: DNA-directed RNA polymerase; n=1;
Oltmannsiellopsis viridis|Rep: DNA-directed RNA
polymerase - Oltmannsiellopsis viridis (Marine
flagellate)
Length = 1859
Score = 31.1 bits (67), Expect(2) = 0.018
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 63 AMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
A A +E ++I++ + NV+ G+T+ +H+ +I MT
Sbjct: 1675 AYAARKSLERIQQIIVENVLNVYQSQGVTIADKHVEIIVRQMT 1717
Score = 29.9 bits (64), Expect(2) = 0.018
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +3
Query: 192 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 371
Y + +++ ++ S + SF+ + L A + K D LR +++G+L G
Sbjct: 1755 YAPVLVGITKAALDIDKSFISAASFQETTRILSRAAIERKTDFLRGLKENVILGQLIPAG 1814
Query: 372 TG 377
TG
Sbjct: 1815 TG 1816
>UniRef50_Q3LWD4 Cluster: DNA-directed RNA polymerase; n=1;
Bigelowiella natans|Rep: DNA-directed RNA polymerase -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 1329
Score = 40.3 bits (90), Expect = 0.052
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLY-----SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHL 167
Q FK ++LL Y SN I +++ GIEAA + I E+ +F + ++ +
Sbjct: 1194 QEFKLSNLLSSTYFYKLSFDSNHILLVSSLLGIEAAREKIFLELNKIFTTKRVKLNFSFI 1253
Query: 168 TLIADYMTYNGIFEPMS-RKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCL 344
++IAD +T NG +S + +S L + E ++ L + + L
Sbjct: 1254 SIIADNLTLNGKILGISFNQQFIHKNSFLYHAAIEKTIETLIVSSFHGSMSRTSGTLESL 1313
Query: 345 MVGRLCRTGTGV 380
G+ TGTG+
Sbjct: 1314 FHGKRNITGTGI 1325
>UniRef50_Q1L5X9 Cluster: DNA-directed RNA polymerase; n=1; Marchantia
polymorpha|Rep: DNA-directed RNA polymerase - Marchantia
polymorpha (Liverwort)
Length = 1008
Score = 38.7 bits (86), Expect = 0.16
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R I + + G++AA V+++ ++ G ++ +HL L+AD+M Y+G
Sbjct: 748 VDWQRSSPYSIQEIKSVLGVDAARDVLLQRLELAA---GNSIGNKHLKLVADFMVYSGEV 804
Query: 207 EPMSRKGME------ASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
+ ++ G SSP +F + + +A + + + G+
Sbjct: 805 QGLTSYGYRDWMRSLKFSSPFTAGAFRAPIKHFLEAGRKGATERFSGVLASSVFGKKVPL 864
Query: 369 GTG-VFDL 389
GTG VFDL
Sbjct: 865 GTGAVFDL 872
>UniRef50_Q39KH4 Cluster: DNA-directed RNA polymerase subunit beta';
n=45; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 1414
Score = 37.5 bits (83), Expect = 0.37
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 54 DIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
D H + GIEA ++ I+ E+Q+V+ + G+ ++ +H+ +I M
Sbjct: 1222 DPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQM 1266
Score = 36.3 bits (80), Expect = 0.84
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
K ++ S + SF+ + L +A + K+DDLR ++VGRL GTG+
Sbjct: 1317 KASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGL 1369
>UniRef50_P48120 Cluster: DNA-directed RNA polymerase subunit beta'';
n=1; Cyanophora paradoxa|Rep: DNA-directed RNA polymerase
subunit beta'' - Cyanophora paradoxa
Length = 1265
Score = 28.3 bits (60), Expect(2) = 0.45
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = +3
Query: 84 IEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
++ + ++ E+Q+V+ GI + +H+ +I MT
Sbjct: 1084 LQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMT 1119
Score = 27.9 bits (59), Expect(2) = 0.45
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
+Y I +++ + S + SF+ + L A + K D LR +++G L
Sbjct: 1159 SYTPILLGITKSSLNTQSF-ISAASFQETTRVLAKAAVEGKIDQLRGLKENVIIGNLIPA 1217
Query: 369 GTG 377
GTG
Sbjct: 1218 GTG 1220
>UniRef50_Q9PQV5 Cluster: DNA-directed RNA polymerase subunit beta';
n=1; Ureaplasma parvum|Rep: DNA-directed RNA polymerase
subunit beta' - Ureaplasma parvum (Ureaplasma urealyticum
biotype 1)
Length = 1305
Score = 37.1 bits (82), Expect = 0.48
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 19/155 (12%)
Frame = +3
Query: 6 MFKYNHLLDMNRLYSNDIHAMANTYGIEAANK---VIIKEIQNVFNV---------YGIT 149
+ KY + ++ ++ + GIE ++K VII ++ N + G T
Sbjct: 1144 LLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLTNKITITNPGDSGLFVGET 1203
Query: 150 VDPRHLTLIADYMTYNGIFEPMSRK---GME----ASSSPLQQMSFESSLLFLKDAILNS 308
+ T +A M N P + G++ S S L SF+ + L DA S
Sbjct: 1204 ISINEFTEVAQNMLVNKKKPPSAINQVFGLDHAPSKSGSFLSAASFQDTKKILTDAAARS 1263
Query: 309 KKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 413
+KD L +++G L GTG+ D++ YG+
Sbjct: 1264 QKDMLIGLKENVILGNLIPAGTGLKDVEEVIAYGE 1298
Score = 34.7 bits (76), Expect = 2.6
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
S D++ + GIE IIKE+Q V+ + GI + +++ +I +T
Sbjct: 1138 SIDVNDLLKYAGIENVRHYIIKEVQKVYRMQGIEISDKYIEVIISQLT 1185
>UniRef50_O78483 Cluster: DNA-directed RNA polymerase subunit beta'';
n=2; Cryptomonadaceae|Rep: DNA-directed RNA polymerase
subunit beta'' - Guillardia theta (Cryptomonas phi)
Length = 1286
Score = 31.5 bits (68), Expect(2) = 0.58
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +3
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
TY I +++ + S + SF+ + L +A + K D LR +++GRL
Sbjct: 1161 TYCPILLGITKASLNTDSF-ISAASFQETTRVLTEAAIEGKADWLRGLKENVIIGRLIPA 1219
Query: 369 GTGVFDLQHSHLYGK 413
GTG H K
Sbjct: 1220 GTGFNAYNEQHKSSK 1234
Score = 24.2 bits (50), Expect(2) = 0.58
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +3
Query: 30 DMNRLYSNDIHAMANTY-----GIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
+M LY N ++ Y ++ ++ E+Q V+ + + +H+ +I MT
Sbjct: 1063 EMLNLYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMT 1121
>UniRef50_A3A384 Cluster: DNA-directed RNA polymerase; n=2; Oryza
sativa|Rep: DNA-directed RNA polymerase - Oryza sativa
subsp. japonica (Rice)
Length = 2056
Score = 36.3 bits (80), Expect = 0.84
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
+L+D+ R I + GI A +++ + + V HL L+A+ MT+ G
Sbjct: 1203 NLIDIRRSIPYGIQQVRELLGISCAFDQVVQRLSTTVRMVAKDVLKDHLVLVANSMTFTG 1262
Query: 201 IFEPMSRKGMEASSSPLQ-QMSFESSLLF-----LKDAILNSKKDDLRSASSCLMVGRLC 362
+ G +A+ L+ Q+ F S L + A D L S G+
Sbjct: 1263 NLNGFNNAGYKATFRSLKVQVPFTESTLITPMKCFEKAAEKCHSDSLGCVVSSCSWGKHA 1322
Query: 363 RTGTG 377
+GTG
Sbjct: 1323 ASGTG 1327
>UniRef50_Q9CK92 Cluster: DNA-directed RNA polymerase subunit beta';
n=86; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Pasteurella multocida
Length = 1417
Score = 36.3 bits (80), Expect = 0.84
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSH 401
K A+ S + SF+ + L +A + K+D+LR ++VGRL GTG H +
Sbjct: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGF--AYHQN 1368
Query: 402 LYGKVNLSKS*PPRHS 449
KV +S P + S
Sbjct: 1369 RQKKVVMSDEMPVKLS 1384
Score = 35.9 bits (79), Expect = 1.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +3
Query: 60 HAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGI 203
H + G+ A + I+ E+Q V+ + G+ ++ +H+ +I M GI
Sbjct: 1218 HDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGI 1265
>UniRef50_Q7VRP8 Cluster: DNA-directed RNA polymerase subunit beta';
n=16; cellular organisms|Rep: DNA-directed RNA polymerase
subunit beta' - Blochmannia floridanus
Length = 1420
Score = 36.3 bits (80), Expect = 0.84
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
K A+ S + SF+ + L ++ + KKDDLR ++VGRL GTG
Sbjct: 1322 KASLATESFISAASFQETTRVLTESSVAGKKDDLRGLKENVIVGRLIPAGTG 1373
>UniRef50_Q8G515 Cluster: DNA-directed RNA polymerase subunit beta';
n=68; Actinobacteridae|Rep: DNA-directed RNA polymerase
subunit beta' - Bifidobacterium longum
Length = 1345
Score = 35.9 bits (79), Expect = 1.1
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
K A+ S L SF+ + L +A L+ K DDL+ +++G+L GTG+
Sbjct: 1217 KASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGKLIPAGTGL 1269
>UniRef50_Q73JJ8 Cluster: DNA-directed RNA polymerase subunit beta';
n=10; Spirochaetales|Rep: DNA-directed RNA polymerase
subunit beta' - Treponema denticola
Length = 1424
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
S D H + N G A ++KEI+ V++ G+T++ +H+ +I M
Sbjct: 1223 SFDPHDILNILGENALQNYLMKEIKEVYDAQGVTINDKHVGIIVRQM 1269
>UniRef50_Q82DQ4 Cluster: DNA-directed RNA polymerase subunit beta';
n=26; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Streptomyces avermitilis
Length = 1299
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
K A+ S L SF+ + L DA +N+K D L +++G+L GTG+
Sbjct: 1195 KASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGL 1247
>UniRef50_Q6F0L8 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Mollicutes|Rep: DNA-directed RNA polymerase subunit
beta' - Mesoplasma florum (Acholeplasma florum)
Length = 1254
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3
Query: 219 RKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQ 392
+K S S L SF+ + L DAI+ ++D L +M+G L GTG+ ++
Sbjct: 1183 KKAPLKSESWLSSASFQDTARVLTDAIIKGREDKLEGLKENIMLGNLIPAGTGLTGIE 1240
>UniRef50_Q5FTX8 Cluster: DNA-directed RNA polymerase subunit beta';
n=224; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Gluconobacter oxydans (Gluconobacter suboxydans)
Length = 1439
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 HAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYN-GIFEP 212
H + G+EA + ++ EIQ+V+ + G+ ++ +H+ +I M I EP
Sbjct: 1264 HDILKVMGVEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILEP 1315
>UniRef50_Q7VKL8 Cluster: DNA-directed RNA polymerase subunit beta';
n=685; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Haemophilus ducreyi
Length = 1420
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTG 377
K A+ S + SF+ + L +A + K+D+LR ++VGRL GTG
Sbjct: 1311 KASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTG 1362
>UniRef50_Q1ACN4 Cluster: DNA-directed RNA polymerase subunit beta'';
n=1; Chara vulgaris|Rep: DNA-directed RNA polymerase
subunit beta'' - Chara vulgaris (Common stonewort)
Length = 1412
Score = 29.1 bits (62), Expect(2) = 2.2
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +3
Query: 186 MTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCR 365
M Y I ++R + S + + SF+ + L A + + D L+ +++GRL
Sbjct: 1281 MFYKPILVGITRASLNTRSF-ISEASFQETTRVLTKAAIKGRTDWLKGLKENVILGRLIP 1339
Query: 366 TGTG 377
GTG
Sbjct: 1340 AGTG 1343
Score = 24.6 bits (51), Expect(2) = 2.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 84 IEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMT 191
+E + ++ EIQ V+ G+ + +H+ +I MT
Sbjct: 1210 MERSKLDLVFEIQQVYRSQGVYICDKHIEIIVRQMT 1245
>UniRef50_Q7PXW8 Cluster: ENSANGP00000017385; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000017385 - Anopheles gambiae
str. PEST
Length = 803
Score = 34.7 bits (76), Expect = 2.6
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 20 SLAGHEQTVQQRHTRDGQHVWHRSRQQSHHKGDTKRI*RLR 142
SLA H+Q QQ H + QH H + H+ RI R+R
Sbjct: 657 SLASHQQQHQQHHHQHHQHQHHHALPAHQHQASNNRIDRIR 697
>UniRef50_Q2W2I2 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Proteobacteria|Rep: DNA-directed RNA polymerase
subunit beta' - Magnetospirillum magneticum (strain AMB-1
/ ATCC 700264)
Length = 1496
Score = 34.7 bits (76), Expect = 2.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 60 HAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
H + G+EA + +I EIQ V+ + G+ ++ +H+ +I M
Sbjct: 1309 HDILKVLGVEALAQYLINEIQEVYRLQGVKINDKHIEVIVRQM 1351
>UniRef50_A5Z8Z4 Cluster: DNA-directed RNA polymerase; n=2;
Bacteria|Rep: DNA-directed RNA polymerase - Eubacterium
ventriosum ATCC 27560
Length = 1270
Score = 33.9 bits (74), Expect = 4.5
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGV 380
K A+SS L SF+ + L +A +N K D L +++G+L GTG+
Sbjct: 1162 KASLATSSFLSAASFQETTRVLTEAAINGKVDPLVGLKENVIIGKLIPAGTGM 1214
>UniRef50_A6YGE2 Cluster: DNA-directed RNA polymerase; n=1; Leptosira
terrestris|Rep: DNA-directed RNA polymerase - Leptosira
terrestris (Pleurastrum terrestre)
Length = 3576
Score = 33.9 bits (74), Expect = 4.5
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +3
Query: 237 SSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQHSHLYGK 413
+ S L +SF+ + L A + K+D LR ++VG L TGTG F + GK
Sbjct: 3482 TESVLSAVSFQETTRGLSIAAFSRKRDFLRGIKERVIVGELIPTGTGYFATTENSGSGK 3540
>UniRef50_Q8RHI7 Cluster: DNA-directed RNA polymerase subunit beta';
n=4; Bacteria|Rep: DNA-directed RNA polymerase subunit
beta' - Fusobacterium nucleatum subsp. nucleatum
Length = 1319
Score = 33.5 bits (73), Expect = 5.9
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 72 NTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
N G+ AA + I++ +Q V+ G+TV+ +H+ +I M
Sbjct: 1159 NIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQM 1197
>UniRef50_Q4UCH6 Cluster: Putative uncharacterized protein; n=2;
Theileria|Rep: Putative uncharacterized protein -
Theileria annulata
Length = 346
Score = 33.1 bits (72), Expect = 7.9
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +3
Query: 159 RHLTLIADYMTYNGIFEPMSRK-GMEASSSP-LQQMSFESSLLFLKDAILNSKKDDLR 326
R + + DYM YNG+ ++ G+ P + +++FE L LKD + KDDLR
Sbjct: 247 RTVVALWDYMLYNGLSSVLTVSLGLMWLLMPQITRLNFEGILTLLKDIKSSDSKDDLR 304
>UniRef50_O67763 Cluster: DNA-directed RNA polymerase subunit beta';
n=5; Aquificaceae|Rep: DNA-directed RNA polymerase
subunit beta' - Aquifex aeolicus
Length = 1574
Score = 33.1 bits (72), Expect = 7.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 81 GIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
GIE K ++KE+Q V+ + G+ ++ +H +I M
Sbjct: 1410 GIEELEKFLLKEVQMVYKLQGVDINDKHFEIIIKQM 1445
>UniRef50_Q7PCJ6 Cluster: DNA-directed RNA polymerase subunit beta'';
n=4; Eukaryota|Rep: DNA-directed RNA polymerase subunit
beta'' - Chlamydomonas reinhardtii
Length = 3120
Score = 33.1 bits (72), Expect = 7.9
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = +3
Query: 192 YNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTG 371
Y I ++R +E S L SF+ + L A L KKD L+ +++G L G
Sbjct: 3053 YEPIVLGITRASLEVESF-LSAASFQQTTRVLSQAALYKKKDFLKGLKENIIIGNLIPAG 3111
Query: 372 TG 377
TG
Sbjct: 3112 TG 3113
>UniRef50_P60289 Cluster: DNA-directed RNA polymerase subunit beta'';
n=24; Spermatophyta|Rep: DNA-directed RNA polymerase
subunit beta'' - Amborella trichopoda
Length = 1373
Score = 33.1 bits (72), Expect = 7.9
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Frame = +3
Query: 87 EAANKVIIKE--IQNVFN---VYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPL 251
+ +KV++ E + NVF+ + G+ R + D + Y I ++R + S +
Sbjct: 1220 QITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSF-I 1278
Query: 252 QQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFD-LQHSHLYGKVNL 422
+ SF+ + L A L S+ D L+ +++G + GTG + HS + ++L
Sbjct: 1279 SEASFQETTRVLAKAALRSRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSREHNNISL 1336
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,391,102
Number of Sequences: 1657284
Number of extensions: 14366544
Number of successful extensions: 39659
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 37993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39542
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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