Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F15
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 132 5e-32
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 87 3e-18
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 75 1e-14
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce... 29 0.56
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 3.9
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom... 27 3.9
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 5.2
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 5.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.2
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch... 25 9.1
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 9.1
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 132 bits (319), Expect = 5e-32
Identities = 63/125 (50%), Positives = 87/125 (69%)
Frame = +3
Query: 15 YNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTY 194
YN + MN +Y+NDI A+ YG+EAA I+ E+ +VF VYGI VDPRHL+LIADYMT+
Sbjct: 1556 YNEI-SMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTF 1614
Query: 195 NGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGT 374
G ++ +R G+E ++SP +MSFE++ FL +A L DDL + SS L+VGR+ GT
Sbjct: 1615 EGGYKAFNRMGIEYNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGT 1674
Query: 375 GVFDL 389
G FD+
Sbjct: 1675 GSFDI 1679
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 86.6 bits (205), Expect = 3e-18
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R YSN + GIEA ++KE++NV G V+ RHL L+ D MT G
Sbjct: 1328 VDATRTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHL 1387
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ A + L + SFE ++ L DA + +KDD + S +M+G+L GTG F
Sbjct: 1388 MAITRHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTGAF 1447
Query: 384 DL 389
D+
Sbjct: 1448 DI 1449
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 74.9 bits (176), Expect = 1e-14
Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +3
Query: 48 SNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKG 227
+N + M + GIEAA II EI +G+TVDPRH+ L+ D MT G ++R G
Sbjct: 1262 TNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFG 1321
Query: 228 M-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
+ + S L SFE + L +A KD + S C+++G+L GT VF L
Sbjct: 1322 VAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQL 1376
>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 29.5 bits (63), Expect = 0.56
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = -2
Query: 563 LSKLTPSTDDDDIN-LSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQ--INFAIQVRV 393
L++ TD+ D LSL K+K S A D K R RR RLR+ + V
Sbjct: 75 LNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTSVVA 134
Query: 392 LQIENAGAGATQPAD-HQTARGGPEIIFLRIQYGVLQ 285
+ E A A T + + AR G +F ++ LQ
Sbjct: 135 VNAETAKALFTHERELRRIARRGVVQLFNAVRTAQLQ 171
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 539 DDDDINLSLMGKAKDFSPYSQAPSTDRKAR*MTRRSRLRQIN 414
DD+ L L+ KAKD TD+ +TR R++Q N
Sbjct: 777 DDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRAVRIQQSN 818
>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +3
Query: 126 VFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLL 281
VF +Y T+ HL +I ++ + P+ + +++PL Q+SF S+L
Sbjct: 25 VFGLYSFTLI-LHLLVINRVDVFSLLHTPLPVNRSQQANAPLWQLSFSLSIL 75
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 26.2 bits (55), Expect = 5.2
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 15/169 (8%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAM---ANTYGIEAANKVIIKEIQNVFN----VYGITVDPR 161
+++ +N+ L SN I + +++Y I + N I+ N + + DP+
Sbjct: 325 ELWAFNYSQQRWSLVSNPIPILLSDSSSYKIVSKNNHILLLYLNALDAPKQLLCYEADPK 384
Query: 162 HLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSC 341
+L D + + + +S K AS+ + SL +L D +SKK+ + S SS
Sbjct: 385 NLYWDKDKFSDIPVLQHISMKPSNASNHTV-------SLGYLNDRPNHSKKNSVTSTSSS 437
Query: 342 LMVGRLCRTGTGVFDLQHSH--------LYGKVNLSKS*PPRHSPCFSI 464
L + V +H H L+ NLSK+ HS FS+
Sbjct: 438 QFNNFLEQNQKAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSL 486
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/33 (27%), Positives = 20/33 (60%)
Frame = -3
Query: 136 TLNTFCISFMMTLLAASMPYVLAIACMSLLYSL 38
+++ FCIS + L ++ + AI C ++ Y++
Sbjct: 898 SISHFCISNFLILFITALEHASAILCKNITYTI 930
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 222 KGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRS 329
K ++ +SS LQQ+ E + K++ L+ + +DLR+
Sbjct: 630 KQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRT 665
>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 9.1
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 591 CVFCYTKLSTVKVDTFDR 538
C++CY+K+ V ++ DR
Sbjct: 240 CLYCYSKIDAVSLEEVDR 257
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 388 RSKTPVPVRHSRPTIRQLEADRRSSF 311
+SK PVPV+ S+ T QL+ + S++
Sbjct: 161 KSKVPVPVKISKGTAEQLKREVVSAY 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,304
Number of Sequences: 5004
Number of extensions: 61299
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -