Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F15
(771 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 144 9e-35
SB_2175| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 3e-23
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 83 3e-16
SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.021
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 31 1.0
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16888| Best HMM Match : ResIII (HMM E-Value=2.6) 29 5.5
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_29795| Best HMM Match : ResIII (HMM E-Value=0.16) 28 9.6
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 28 9.6
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 144 bits (348), Expect = 9e-35
Identities = 65/122 (53%), Positives = 95/122 (77%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
F+Y +++++++LY+NDIHA+A TYGIEAA + I KE++NVF YGI VDPRHLTL++DYM
Sbjct: 1034 FRYPNIINVDKLYTNDIHAVARTYGIEAAARAITKEVKNVFGGYGIHVDPRHLTLVSDYM 1093
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
TY G + +R G+E+S+SP Q+MSFE++ FL+ A+L+ + L+S SS L+VGR+
Sbjct: 1094 TYEGKIKAFNRIGIESSASPFQKMSFETTTHFLRGAVLSGDMESLKSPSSRLVVGRVVGG 1153
Query: 369 GT 374
GT
Sbjct: 1154 GT 1155
>SB_2175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 97
Score = 105 bits (253), Expect = 3e-23
Identities = 49/92 (53%), Positives = 69/92 (75%)
Frame = +3
Query: 114 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 293
E++NVF YGI VDPRHLTL++DYMTY G + +R G+E+S+SP Q+MSFE++ FL+
Sbjct: 1 EVKNVFGGYGIHVDPRHLTLVSDYMTYEGKIKAFNRIGIESSASPFQKMSFETTTHFLRG 60
Query: 294 AILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
A+L+ + L+S SS L+VGR+ GTG F+L
Sbjct: 61 AVLSGDMESLKSPSSRLVVGRVVGGGTGSFEL 92
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 82.6 bits (195), Expect = 3e-16
Identities = 46/122 (37%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + + GIEA K + +E+ +V + G V+ RHL L+ D MT G
Sbjct: 167 VDPVRTTSNDICEIFSVLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHL 226
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ L + SFE ++ L DA +++ D LR S C+++G+L R GTG F
Sbjct: 227 MAITRHGINRQEVGALMRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSF 286
Query: 384 DL 389
DL
Sbjct: 287 DL 288
>SB_9123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 244
Score = 36.7 bits (81), Expect = 0.021
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 9/120 (7%)
Frame = +3
Query: 99 KVIIKEIQNVFNVYGITVDPRHLTLIADYMTY------NGIFEPM--SRKGMEASSSPLQ 254
+ I+ EI +G+++D RH+ L+A+ M + + +FE RK + L
Sbjct: 79 QTIMNEIIYTMKNHGMSIDVRHVMLLAELMAFKFERTADHLFEAALHGRKDPIDGKNALH 138
Query: 255 QMSFESSLLFLKDAILNSKKDDLRS-ASSCLMVGRLCRTGTGVFDLQHSHLYGKVNLSKS 431
SF + + +S S S C+++G GTG+F L H + + L ++
Sbjct: 139 SHSFNGFICHASRSRSSSNISAFVSRVSECIIMGMPMNIGTGMFKLLHKYPLHNMKLDRT 198
>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 272
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 283 NKSDDSNDICCNGDEDASIPFRLIGSKIPLYVM*SAMRVKW 161
+ DD + N D AS+PF +IGS + V +R +W
Sbjct: 175 DSEDDEEFLAINKDLKASLPFAVIGSNTVIEVKGRKVRARW 215
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 32 HEQTVQQRHTRDGQHVWHRSRQQSHH 109
H+Q QQRH + QH H +QQ HH
Sbjct: 1110 HDQQQQQRHDQQQQH--HDQQQQQHH 1133
>SB_57683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 469 RPIEKHGE*RGGHDLDRLT-LPYKCECCRSKTPVPVRHSRPTIRQLEADRR 320
+PIEK GH LDRL + ECC+ +T V +R IR E+D R
Sbjct: 60 KPIEKWRPSELGHKLDRLAEVIIIDECCKVQTKV-LRAILGNIRWFESDYR 109
>SB_16888| Best HMM Match : ResIII (HMM E-Value=2.6)
Length = 811
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 469 RPIEKHGE*RGGHDLDRLT-LPYKCECCRSKTPV 371
+PIE+ G GH LDRL L ECC+ +T V
Sbjct: 517 KPIEEWGPSELGHKLDRLAELIIIDECCKVQTKV 550
>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1128
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 307 EFNMASFKNKSDDSNDICCNGDEDASIPF 221
+FN + N S D N CC+G++ + PF
Sbjct: 324 DFNCTHYINGSSDCNHKCCDGEKCNAGPF 352
>SB_29795| Best HMM Match : ResIII (HMM E-Value=0.16)
Length = 818
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 469 RPIEKHGE*RGGHDLDRLT-LPYKCECCRSKTPV 371
+P+EK G GH LDRL + ECC+ +T V
Sbjct: 454 KPMEKWGPFELGHKLDRLAEVIIIDECCKVQTKV 487
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 17 QSLAGHEQTVQQRHTRDGQHVWHRSRQQSH 106
Q + +Q QQ H + H HR QQ+H
Sbjct: 244 QQTSYQQQQQQQHHQQQPNHTQHRESQQNH 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,559,070
Number of Sequences: 59808
Number of extensions: 472706
Number of successful extensions: 1219
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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