Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F15
(771 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subuni... 186 3e-47
AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p pro... 186 3e-47
AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-P... 186 3e-47
M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein ( D.me... 81 2e-15
AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p pro... 81 2e-15
AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA... 81 2e-15
AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-P... 69 7e-12
AF184227-1|AAD55738.1| 970|Drosophila melanogaster LD23194p pro... 30 4.0
AF017777-1|AAC28400.1| 836|Drosophila melanogaster tweety protein. 30 4.0
AE014298-3117|AAN09675.3| 836|Drosophila melanogaster CG1693-PB... 30 4.0
AE014298-3116|AAF50831.4| 970|Drosophila melanogaster CG1693-PA... 30 4.0
AY971884-1|AAX73355.1| 1518|Drosophila melanogaster hormone rece... 29 7.1
AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2 ... 29 7.1
AE014298-306|ABC67166.1| 1518|Drosophila melanogaster CG16902-PC... 29 7.1
AE014297-3344|AAF56150.2| 694|Drosophila melanogaster CG16723-P... 29 7.1
AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p pro... 29 9.3
AY069287-1|AAL39432.1| 392|Drosophila melanogaster GM14337p pro... 29 9.3
AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA p... 29 9.3
AE014134-1217|AAN10611.1| 392|Drosophila melanogaster CG31908-P... 29 9.3
AE014134-1216|AAN10610.1| 392|Drosophila melanogaster CG31908-P... 29 9.3
>Y09103-1|CAA70321.1| 1644|Drosophila melanogaster largest subunit of
RNA polymeraseI (A) protein.
Length = 1644
Score = 186 bits (453), Expect = 3e-47
Identities = 89/129 (68%), Positives = 107/129 (82%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MF++N +LD+NRLYSNDIHA+A TYGIEAA++VI+KE+ NVF VYGITVD RHL+LIAD
Sbjct: 1511 EMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIAD 1570
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT++G F+P+SRKGME SSSPLQQMSFESSL FLK A + D+L S SS LMVG
Sbjct: 1571 YMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPV 1630
Query: 363 RTGTGVFDL 389
R GTG F+L
Sbjct: 1631 RNGTGAFEL 1639
>AY121632-1|AAM51959.1| 542|Drosophila melanogaster GM01935p
protein.
Length = 542
Score = 186 bits (453), Expect = 3e-47
Identities = 89/129 (68%), Positives = 107/129 (82%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MF++N +LD+NRLYSNDIHA+A TYGIEAA++VI+KE+ NVF VYGITVD RHL+LIAD
Sbjct: 409 EMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIAD 468
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT++G F+P+SRKGME SSSPLQQMSFESSL FLK A + D+L S SS LMVG
Sbjct: 469 YMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPV 528
Query: 363 RTGTGVFDL 389
R GTG F+L
Sbjct: 529 RNGTGAFEL 537
>AE013599-1910|AAF58234.1| 1642|Drosophila melanogaster CG10122-PA
protein.
Length = 1642
Score = 186 bits (453), Expect = 3e-47
Identities = 89/129 (68%), Positives = 107/129 (82%)
Frame = +3
Query: 3 QMFKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIAD 182
+MF++N +LD+NRLYSNDIHA+A TYGIEAA++VI+KE+ NVF VYGITVD RHL+LIAD
Sbjct: 1509 EMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIAD 1568
Query: 183 YMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLC 362
YMT++G F+P+SRKGME SSSPLQQMSFESSL FLK A + D+L S SS LMVG
Sbjct: 1569 YMTFDGTFQPLSRKGMEHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPV 1628
Query: 363 RTGTGVFDL 389
R GTG F+L
Sbjct: 1629 RNGTGAFEL 1637
>M27431-1|AAA28868.1| 1896|Drosophila melanogaster protein (
D.melanogaster RpII215gene encoding RNA polymerase II,
largest subunit, completecds. ).
Length = 1896
Score = 81.0 bits (191), Expect = 2e-15
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K + KE+ V YG+ V+ RHL L+ D MT G
Sbjct: 1344 VDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHL 1403
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + L + SFE ++ L DA +++ D +R S +++G+L + GTG F
Sbjct: 1404 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCF 1463
Query: 384 DL 389
DL
Sbjct: 1464 DL 1465
>AY089555-1|AAL90293.1| 1429|Drosophila melanogaster LD43558p protein.
Length = 1429
Score = 81.0 bits (191), Expect = 2e-15
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K + KE+ V YG+ V+ RHL L+ D MT G
Sbjct: 886 VDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHL 945
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + L + SFE ++ L DA +++ D +R S +++G+L + GTG F
Sbjct: 946 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCF 1005
Query: 384 DL 389
DL
Sbjct: 1006 DL 1007
>AE014298-1637|AAF48057.1| 1887|Drosophila melanogaster CG1554-PA
protein.
Length = 1887
Score = 81.0 bits (191), Expect = 2e-15
Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K + KE+ V YG+ V+ RHL L+ D MT G
Sbjct: 1344 VDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHL 1403
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + L + SFE ++ L DA +++ D +R S +++G+L + GTG F
Sbjct: 1404 MAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCF 1463
Query: 384 DL 389
DL
Sbjct: 1464 DL 1465
>AE014298-2217|AAF48509.2| 1304|Drosophila melanogaster CG17209-PA
protein.
Length = 1304
Score = 68.9 bits (161), Expect = 7e-12
Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +3
Query: 39 RLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMS 218
R SN+I + T GIEAA +I+ EI V +G++VD RH+ L+A MT G ++
Sbjct: 1159 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLGIT 1218
Query: 219 RKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVFDLQH 395
R G+ + S SFE + L DA + D + S +++G GTG+F L
Sbjct: 1219 RHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQ 1278
Query: 396 SH 401
H
Sbjct: 1279 QH 1280
>AF184227-1|AAD55738.1| 970|Drosophila melanogaster LD23194p
protein.
Length = 970
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 QSLAGHEQTVQQRHTRDGQH-VWHRSRQQSHHK 112
Q L H+Q QQ+H + H H+ +QQ HH+
Sbjct: 723 QQLQQHQQQQQQQHHQQQHHQQQHQQQQQQHHQ 755
>AF017777-1|AAC28400.1| 836|Drosophila melanogaster tweety protein.
Length = 836
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 QSLAGHEQTVQQRHTRDGQH-VWHRSRQQSHHK 112
Q L H+Q QQ+H + H H+ +QQ HH+
Sbjct: 723 QQLQQHQQQQQQQHHQQQHHQQQHQQQQQQHHQ 755
>AE014298-3117|AAN09675.3| 836|Drosophila melanogaster CG1693-PB,
isoform B protein.
Length = 836
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 QSLAGHEQTVQQRHTRDGQH-VWHRSRQQSHHK 112
Q L H+Q QQ+H + H H+ +QQ HH+
Sbjct: 723 QQLQQHQQQQQQQHHQQQHHQQQHQQQQQQHHQ 755
>AE014298-3116|AAF50831.4| 970|Drosophila melanogaster CG1693-PA,
isoform A protein.
Length = 970
Score = 29.9 bits (64), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 17 QSLAGHEQTVQQRHTRDGQH-VWHRSRQQSHHK 112
Q L H+Q QQ+H + H H+ +QQ HH+
Sbjct: 723 QQLQQHQQQQQQQHHQQQHHQQQHQQQQQQHHQ 755
>AY971884-1|AAX73355.1| 1518|Drosophila melanogaster hormone
receptor 4 protein.
Length = 1518
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 11 QIQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHHK 112
Q L H Q QQ+ + QH+ + +QQ HH+
Sbjct: 549 QQSPLLQHHQQQQQQQQQQQQHLHQQQQQQQHHQ 582
>AL035245-2|CAA22836.1| 1464|Drosophila melanogaster EG:133E12.2
protein.
Length = 1464
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 11 QIQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHHK 112
Q L H Q QQ+ + QH+ + +QQ HH+
Sbjct: 494 QQSPLLQHHQQQQQQQQQQQQHLHQQQQQQQHHQ 527
>AE014298-306|ABC67166.1| 1518|Drosophila melanogaster CG16902-PC
protein.
Length = 1518
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 11 QIQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHHK 112
Q L H Q QQ+ + QH+ + +QQ HH+
Sbjct: 549 QQSPLLQHHQQQQQQQQQQQQHLHQQQQQQQHHQ 582
>AE014297-3344|AAF56150.2| 694|Drosophila melanogaster CG16723-PA
protein.
Length = 694
Score = 29.1 bits (62), Expect = 7.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 149 GYTVNVKYVLYLLYDDFVGGFDAIRVGHR 63
G+TV + Y+LYL+ + + GFD+I G +
Sbjct: 626 GFTVLMSYILYLIIEAPLCGFDSILRGRK 654
>AY069723-1|AAL39868.1| 492|Drosophila melanogaster LP02895p
protein.
Length = 492
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 135 VYGITVDPRHLTLIADYMTYNGIFEPMSR 221
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>AY069287-1|AAL39432.1| 392|Drosophila melanogaster GM14337p
protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 14 IQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHH 109
+QS H+Q QQ+H QH H+++Q H
Sbjct: 334 LQSPQQHQQQHQQQHQHQQQHQNHQAQQLGQH 365
>AE014296-1|AAF47322.2| 492|Drosophila melanogaster CG32475-PA
protein.
Length = 492
Score = 28.7 bits (61), Expect = 9.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 135 VYGITVDPRHLTLIADYMTYNGIFEPMSR 221
V+ TV PRH + D++ NGI P SR
Sbjct: 49 VHNWTVIPRHFVAVYDFVIENGIRIPASR 77
>AE014134-1217|AAN10611.1| 392|Drosophila melanogaster CG31908-PB,
isoform B protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 14 IQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHH 109
+QS H+Q QQ+H QH H+++Q H
Sbjct: 334 LQSPQQHQQQHQQQHQHQQQHQNHQAQQLGQH 365
>AE014134-1216|AAN10610.1| 392|Drosophila melanogaster CG31908-PA,
isoform A protein.
Length = 392
Score = 28.7 bits (61), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 14 IQSLAGHEQTVQQRHTRDGQHVWHRSRQQSHH 109
+QS H+Q QQ+H QH H+++Q H
Sbjct: 334 LQSPQQHQQQHQQQHQHQQQHQNHQAQQLGQH 365
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,893,080
Number of Sequences: 53049
Number of extensions: 695538
Number of successful extensions: 2592
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2566
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3561257073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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