Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F15
(771 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical pr... 139 2e-33
Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical pr... 139 2e-33
AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical ... 139 2e-33
Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical pr... 105 5e-23
Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical p... 105 5e-23
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 82 4e-16
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 82 5e-16
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 77 2e-14
U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical pr... 31 0.69
AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical ... 30 2.1
AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical ... 29 2.8
Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical pr... 29 3.7
AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical ... 29 3.7
>Z93392-1|CAB07687.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 139 bits (337), Expect = 2e-33
Identities = 63/127 (49%), Positives = 94/127 (74%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
FK+ +LD+N +YSND++ + YG+EA +K I E+ NVF VYGI V RHL+L ADYM
Sbjct: 1584 FKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYM 1643
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
T+ G +P +R M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R
Sbjct: 1644 TFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG 1703
Query: 369 GTGVFDL 389
GTG FDL
Sbjct: 1704 GTGSFDL 1710
>Z83219-9|CAB05699.2| 1737|Caenorhabditis elegans Hypothetical protein
Y48E1A.1a protein.
Length = 1737
Score = 139 bits (337), Expect = 2e-33
Identities = 63/127 (49%), Positives = 94/127 (74%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
FK+ +LD+N +YSND++ + YG+EA +K I E+ NVF VYGI V RHL+L ADYM
Sbjct: 1584 FKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYM 1643
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
T+ G +P +R M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R
Sbjct: 1644 TFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG 1703
Query: 369 GTGVFDL 389
GTG FDL
Sbjct: 1704 GTGSFDL 1710
>AL032648-9|CAB54460.1| 1737|Caenorhabditis elegans Hypothetical
protein Y48E1A.1a protein.
Length = 1737
Score = 139 bits (337), Expect = 2e-33
Identities = 63/127 (49%), Positives = 94/127 (74%)
Frame = +3
Query: 9 FKYNHLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYM 188
FK+ +LD+N +YSND++ + YG+EA +K I E+ NVF VYGI V RHL+L ADYM
Sbjct: 1584 FKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYM 1643
Query: 189 TYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRT 368
T+ G +P +R M +SSSPLQ+M+FE+++ FL++A+L+ ++D++ S S+ L++G L R
Sbjct: 1644 TFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG 1703
Query: 369 GTGVFDL 389
GTG FDL
Sbjct: 1704 GTGSFDL 1710
>Z93392-2|CAI46615.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 105 bits (251), Expect = 5e-23
Identities = 48/92 (52%), Positives = 70/92 (76%)
Frame = +3
Query: 114 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 293
E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+M+FE+++ FL++
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLRE 61
Query: 294 AILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 62 ALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
>Z83219-10|CAI46565.1| 120|Caenorhabditis elegans Hypothetical
protein Y48E1A.1b protein.
Length = 120
Score = 105 bits (251), Expect = 5e-23
Identities = 48/92 (52%), Positives = 70/92 (76%)
Frame = +3
Query: 114 EIQNVFNVYGITVDPRHLTLIADYMTYNGIFEPMSRKGMEASSSPLQQMSFESSLLFLKD 293
E+ NVF VYGI V RHL+L ADYMT+ G +P +R M +SSSPLQ+M+FE+++ FL++
Sbjct: 2 EMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNRGAMSSSSSPLQKMTFETTMAFLRE 61
Query: 294 AILNSKKDDLRSASSCLMVGRLCRTGTGVFDL 389
A+L+ ++D++ S S+ L++G L R GTG FDL
Sbjct: 62 ALLHGEEDNVNSPSARLVMGALPRGGTGSFDL 93
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 82.2 bits (194), Expect = 4e-16
Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K I +E+ NV + G V+ RHL L+ D MT G
Sbjct: 1347 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 1406
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
SR G+ L + SFE ++ L +A +++++D ++ S +M+G+L R GTG F
Sbjct: 1407 MAYSRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCF 1466
Query: 384 DL 389
DL
Sbjct: 1467 DL 1468
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 81.8 bits (193), Expect = 5e-16
Identities = 45/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D R SNDI + GIEA K I +E+ NV + G V+ RHL L+ D MT G
Sbjct: 1340 IDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHL 1399
Query: 207 EPMSRKGMEASS-SPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ L + SFE ++ L +A +++++D ++ S +M+G+L R GTG F
Sbjct: 1400 MAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCF 1459
Query: 384 DL 389
DL
Sbjct: 1460 DL 1461
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 76.6 bits (180), Expect = 2e-14
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Frame = +3
Query: 27 LDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNGIF 206
+D + N+ +A+ GIEAA II EI + +GI +D RH+ L+AD MTY G
Sbjct: 1255 VDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEV 1314
Query: 207 EPMSRKGM-EASSSPLQQMSFESSLLFLKDAILNSKKDDLRSASSCLMVGRLCRTGTGVF 383
++R G+ + S L SFE ++ L +A S++D + S C+++G GTG F
Sbjct: 1315 LGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTF 1374
Query: 384 DLQHSH 401
L +
Sbjct: 1375 KLMQKY 1380
>U64848-2|AAM29669.2| 376|Caenorhabditis elegans Hypothetical
protein C50E3.6 protein.
Length = 376
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 364 RHSRPTIRQLEADRRSSFLEFNMASFKNKSDDS 266
+ S P + Q DR S L N+ASF SDD+
Sbjct: 247 KESSPILLQKRGDRSSDHLHHNVASFSRNSDDN 279
>AF067942-9|AAG45572.1| 347|Caenorhabditis elegans Hypothetical
protein ZK6.2 protein.
Length = 347
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = -3
Query: 439 GGHDLDRLTLPYKCECCRSKTPVPVRHSRPTIRQLEADRRSSFLEFNMASFKNKSDDSND 260
G + +R KC CR + + V S P+ L + L+ + + +N + ND
Sbjct: 48 GENCFERPPFTRKCAACRFQKCLHVGMSLPSFLHLGEQNKEKCLDGIIRNLENLNFKRND 107
Query: 259 ICCNGDEDASIP 224
+ CN + S P
Sbjct: 108 LTCNYRNNFSNP 119
>AF098986-2|AAC67423.1| 410|Caenorhabditis elegans Hypothetical
protein C36C9.3 protein.
Length = 410
Score = 29.5 bits (63), Expect = 2.8
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 391 STRTCMAKLICLSRDRRVIHRAFR---SVEGAWLYGLKSFAFPIRDKLISSSSVEGVNFD 561
+ + C L + +RRVI ++ S+E LY K F I L S+ S+E +FD
Sbjct: 179 AVQLCHNDLKLVLENRRVILQSLIIDFSIEEKDLY-TKCFT-DITKMLKSTRSIEVEDFD 236
Query: 562 S*QFSITEYASFIQ 603
+ Q SI++YAS ++
Sbjct: 237 ALQVSISDYASLLE 250
>Z49128-8|CAA88960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
HL + + I + TY + + K +N F++ + D H+ D Y G
Sbjct: 482 HLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKN-FSLNYVIYDEGHMLKNCDSERYRG 540
Query: 201 IFEPMSRKGMEASSSPLQQMSFE--SSLLFLKDAILNSKKDDL 323
+ + +K + + +PLQ E S + F+ + N +D+
Sbjct: 541 LMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDI 583
>AL021171-6|CAA15960.2| 989|Caenorhabditis elegans Hypothetical
protein M03C11.8 protein.
Length = 989
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +3
Query: 21 HLLDMNRLYSNDIHAMANTYGIEAANKVIIKEIQNVFNVYGITVDPRHLTLIADYMTYNG 200
HL + + I + TY + + K +N F++ + D H+ D Y G
Sbjct: 482 HLRHRVKKQKDHIDVILTTYNMVTSKSDDKKFFKN-FSLNYVIYDEGHMLKNCDSERYRG 540
Query: 201 IFEPMSRKGMEASSSPLQQMSFE--SSLLFLKDAILNSKKDDL 323
+ + +K + + +PLQ E S + F+ + N +D+
Sbjct: 541 LMKVKGKKKILLTGTPLQNNLIELISLMYFVLSKVFNKYCEDI 583
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,653,456
Number of Sequences: 27780
Number of extensions: 342616
Number of successful extensions: 970
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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