Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F13
         (851 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    53   6e-08
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    27   3.4  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   4.5  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 48/174 (27%), Positives = 65/174 (37%), Gaps = 13/174 (7%)
 Frame = +2

Query: 368 DMRREEERLKTFDQ--WPVTFLTPEQLARNGFYYLG--------RGDEVCCAFCKVEIMR 517
           +M    +RL TF +  WP    TPE LA  GFYY          R D V C  C      
Sbjct: 18  EMCNYSKRLDTFQKKKWPRAKPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYD 77

Query: 518 WVEGDDPAADHRRWAPQCPFVRKQMYANAGGEAAAVGRDECGASAATQPPRMPGPVHARY 697
           W + DDP  +H   +P CP+     Y  +              +   Q P+       R 
Sbjct: 78  WEDDDDPLKEHITHSPSCPWA----YILS------------SKNNPNQNPQAAALTKCRE 121

Query: 698 STEAARLATFKDWPXCMRQKPEELAXAGFFYTGQG---DKTKCFYCDGGLKXWE 850
            T   ++  + + P     +P  +A +GF Y       D   C YCD  L  WE
Sbjct: 122 QTFVDKVWPYTNRPD-YHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWE 174



 Score = 36.3 bits (80), Expect = 0.006
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = +2

Query: 431 PEQLARNGFYY---LGRGDEVCCAFCKVEIMRWVEGDDPAADHRRWAPQCPF 577
           P  +A +GF Y       D   C +C + +  W   DDP  +H+R    C F
Sbjct: 141 PSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 727 QGLAXMYAPKTRGTGXGRILL 789
           QG+  +  PK RG+G GR+L+
Sbjct: 300 QGILKVNVPKQRGSGSGRLLM 320


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 572 PFVRKQMYANAGGEAAAVGRDECGA-SAATQPPRMPGPVHARYSTEAAR 715
           PF R Q++ANAGG +     + CG   +    P +   +   Y+T AAR
Sbjct: 398 PF-RLQLFANAGGLSNLTSPNPCGTYKSILSKPCISTGLGLVYATPAAR 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,489
Number of Sequences: 5004
Number of extensions: 63145
Number of successful extensions: 152
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)