Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F11
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    86   4e-18
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    50   3e-07
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    47   2e-06
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    44   3e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    33   0.043
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    30   0.40 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    29   0.53 
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    29   0.53 
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    27   2.8  
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    26   6.5  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   6.5  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    25   8.6  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    25   8.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.6  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 40/117 (34%), Positives = 70/117 (59%)
 Frame = +3

Query: 186 ILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRL 365
           ++R +GQ      L+++I EVDAD +G ++F EF+T+ A+ + + D E   +E+REAF++
Sbjct: 37  VMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKMKDTDNE---EEVREAFKV 93

Query: 366 YDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMMTGE 536
           +DK+GNGYI    L  +                I+E DTDG G ++++EF  +++ +
Sbjct: 94  FDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 23/62 (37%), Positives = 34/62 (54%)
 Frame = +3

Query: 342 ELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFME 521
           E REAF L+D++ +G I ++ L  +                I E+D DG+GT+DF EF+ 
Sbjct: 13  EFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLT 72

Query: 522 MM 527
           MM
Sbjct: 73  MM 74


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 30/116 (25%), Positives = 53/116 (45%)
 Frame = +3

Query: 189 LRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLY 368
           +R +G    K  + +++ + D    G L+  +FV +  + IVE D     +E++ AF L+
Sbjct: 63  MRALGFNAEKSEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDP---LEEIKRAFELF 119

Query: 369 DKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMMTGE 536
           D +  G I   +LR +                I+E D D  G ++  EF+ +M  E
Sbjct: 120 DDDETGKISLRNLRRVAKELNENIDDQELEAMIEEFDLDQDGEINEQEFIAIMMDE 175



 Score = 33.9 bits (74), Expect = 0.024
 Identities = 16/71 (22%), Positives = 32/71 (45%)
 Frame = +3

Query: 318 EDAEAMQKELREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGT 497
           E  E  ++++ EAF+L+D + +  I    LR                  +++ D  G G 
Sbjct: 30  EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89

Query: 498 VDFDEFMEMMT 530
           +  ++F+ +MT
Sbjct: 90  LQMEDFVRVMT 100


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
 Frame = +3

Query: 222 ILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTS 401
           +   L   VD D  G ++F EF+   + F V  + E   ++L+ AF++YD + +GYI   
Sbjct: 57  LASRLFSVVDEDGGGDVDFQEFINSLSVFSVHGNKE---EKLKFAFKIYDIDRDGYISNG 113

Query: 402 SL-----REIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMMTG 533
            L       +                I E+D D  G + F+EF ++++G
Sbjct: 114 ELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVSG 162


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 28/119 (23%), Positives = 55/119 (46%)
 Frame = +3

Query: 165 PXDFVADILRMMGQPFNKKILEELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKE 344
           P   V  +LR +G       L +L  E+       ++  +F++  +  + E ++E   +E
Sbjct: 27  PTSHVGSVLRSLGINVTDAELAKLSNEL----GDAIDEKKFMSFVSNKLRETESE---EE 79

Query: 345 LREAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFME 521
             +AFR++DK+ +GYI T+   +                 +QE D   SG+ D+ +F++
Sbjct: 80  YIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138



 Score = 29.1 bits (62), Expect = 0.70
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 342 ELREAFRLYDKEGNGYIPTSSLREI 416
           E++EAF LYD + +G IPTS +  +
Sbjct: 10  EMKEAFVLYDIDKDGLIPTSHVGSV 34


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +3

Query: 228 EELIEEVDADKSGRLEFPEFVTLAAKFIVEEDAEAMQKELREAFRLYDKEGNGYIPTSSL 407
           E +    DADK+G ++F EF+   +   V    E +  +L  AF+LYD + NG I    +
Sbjct: 66  EYVFNVFDADKNGYIDFKEFICALS---VTSRGE-LNDKLIWAFQLYDLDNNGLISYDEM 121

Query: 408 REI 416
             I
Sbjct: 122 LRI 124


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 219 KILEELIEEVDADKSGRLEFPEF 287
           + LEE  ++ DAD SG+L F EF
Sbjct: 333 EFLEETFQKADADHSGKLSFEEF 355


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -2

Query: 515  ELVEVDGAASVSV-DLLDEAIEFIVSQLLVQFPEDLAQARRGNVTVAFLVVQSERFPEFF 339
            EL  V   A  S  DL D AI   ++Q+L  F +DL +     VT+    +    +P ++
Sbjct: 1246 ELTNVVNVALTSTGDLDDSAIVSKLNQILSDFRDDLLEHNVRRVTIVGGRINKSAYPSYY 1305

Query: 338  LHGLS 324
             + +S
Sbjct: 1306 TYRVS 1310


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.53
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +3

Query: 348 REAFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMM 527
           ++AF L+D+ G G IP +S+ ++                I EI++     VD ++F++++
Sbjct: 9   KQAFSLFDRHGTGRIPKTSIGDL----LRACGQNPTLAEITEIESTLPAEVDMEQFLQVL 64


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +3

Query: 339 KELREAFRLYDKEGNGYI 392
           +EL+EAF L DK+G+G I
Sbjct: 48  QELKEAFALLDKDGDGNI 65


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 333 MQKELREAFRLYDKEGNGYIPTSSLR 410
           M +E  EAF L+D    GYI    LR
Sbjct: 10  MDEEAEEAFDLFDVTHKGYIDFEDLR 35


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 409  ARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 516
            A ++G+ TSS  T +   SS  S  T +A  +STSS
Sbjct: 968  ASATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 403  ACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 516
            A A  +G+ TSS  T +   SS  S  T +A  +STSS
Sbjct: 1005 AAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSS 1042


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 210 MAAPSFSGYQPRSXQGILPERL 145
           +  PSFS Y+ +S Q +LP+ L
Sbjct: 447 LTGPSFSRYELQSAQSVLPKDL 468


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 225 LEELIEEVDADKSGRLEFPEFV 290
           + E I EV+ D SGR+E  +FV
Sbjct: 56  VREAIREVNVDSSGRVEPEDFV 77


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 61   TMVDVTS*HCETHNTTHRP 5
            T++D+ S HCE  N   RP
Sbjct: 1099 TLIDIGSIHCEISNFARRP 1117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,588,983
Number of Sequences: 5004
Number of extensions: 46704
Number of successful extensions: 160
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)