Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F10
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>AF047658-3|ABC71828.1|  315|Caenorhabditis elegans Hypothetical
           protein K03H6.4 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +3

Query: 300 IPYIFNLIC-----FNLGILFFLCLTSLGVYIVIIAGWSS 404
           +P IFNL+      +    L F C +S+ ++ V++  W+S
Sbjct: 24  VPLIFNLLSQKRFRYRKDFLLFACASSIDMFYVVVTIWNS 63


>Z69302-4|CAA93263.1|  125|Caenorhabditis elegans Hypothetical
           protein F40F8.9 protein.
          Length = 125

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +3

Query: 102 LERKVLGYIQIRKGPNKVGFIGLLQPFSDAIKLFIKERTYPNFSNYFC 245
           L++K+L  + +R G   +GF+  +  F++ I   + ERT+     YFC
Sbjct: 18  LDKKLL--VVLRDGRKLIGFLRSIDQFANLILEDVVERTF--VEKYFC 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,516,301
Number of Sequences: 27780
Number of extensions: 112375
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)