Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_F_F09
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 251 4e-67
SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0) 34 0.10
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 251 bits (615), Expect = 4e-67
Identities = 119/153 (77%), Positives = 139/153 (90%), Gaps = 3/153 (1%)
Frame = +1
Query: 118 VLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGG---RQHTFVETESVRYVY 288
VL+AA +CTK+GKA++SRQFVEMT++RIEGLL+AFPKLMT G +QHTFVETESVRYVY
Sbjct: 470 VLLAAAICTKNGKAIISRQFVEMTRSRIEGLLSAFPKLMTSGSSVKQHTFVETESVRYVY 529
Query: 289 QPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVA 468
QPL+KLYMLLITTK SNILEDLETLRLFSRV+PEYC + E+E+ AF L+FAFDEIVA
Sbjct: 530 QPLEKLYMLLITTKHSNILEDLETLRLFSRVIPEYCRAMEESEIGEHAFELIFAFDEIVA 589
Query: 469 LGYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQ 567
LGYRE+VNLAQ+R+F EMDSHEEK++QAVRQTQ
Sbjct: 590 LGYRENVNLAQIRTFTEMDSHEEKVFQAVRQTQ 622
>SB_45476| Best HMM Match : Clat_adaptor_s (HMM E-Value=0)
Length = 141
Score = 34.3 bits (75), Expect = 0.10
Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Frame = +1
Query: 145 KSGKALVSRQFVEMTKARIEGLLAAFPKLMT-GGRQHT-FVETESVRYVYQPLDKLYMLL 318
++GK +++ ++ + L+ L+T +HT FVE + + VY+ LY
Sbjct: 9 RAGKTRLAKWYMNFDDDEKQKLIEEVHALVTVRDAKHTNFVEFRNFKIVYRRYAGLYFCF 68
Query: 319 ITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNLA 498
+ N L LE + F V+ E+ + E +++ + + DE+ G + +
Sbjct: 69 CVDVSDNNLYYLEAIHNFVEVLNEFFHNVCELDLVFNFYKVYSVVDEMFLAGELRETSQS 128
Query: 499 QVRSFVEM 522
+V + M
Sbjct: 129 KVLKQLNM 136
>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 32.3 bits (70), Expect = 0.42
Identities = 21/96 (21%), Positives = 47/96 (48%)
Frame = -1
Query: 485 LSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIY 306
+S P +T+S NS + K + + S T T+++ + N++ ++L + + +
Sbjct: 1066 ISKIPSSTVSLPGNSSIMETVKVTPTSSLTTPQNTSVVFT-NITVQDTLVL-YKSSTPVL 1123
Query: 305 NLSSGW*TYLTDSVSTNVCCRPPVISLGKAASRPSM 198
N+SSGW + + +T + + L ++ S S+
Sbjct: 1124 NISSGWNSTVVKESTTTLLLSSSSVPLNESTSNASV 1159
>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1207
Score = 30.7 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 606 LSAFAHAVRCLAFLGLPYGLINLFLVRVHFNKRTDL 499
LS + + L F G+PY ++N++LV V + + TD+
Sbjct: 93 LSVNTNLISVLVFYGVPYLVVNMWLVIVTYLQHTDI 128
>SB_2298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = +1
Query: 250 HTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQ 429
HT TE R + + +DK + + + L+D ET + + V LTETE+ +
Sbjct: 96 HTKGSTEDERLLKKIVDKAFEEKVALTIARYLKDQETFPVEPSIRITVNVDLTETEIHSA 155
Query: 430 AFNLLFAFDEIV 465
A + A D I+
Sbjct: 156 AQVIKNAADSIL 167
>SB_13062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +1
Query: 169 RQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQPLDKLYML 315
R+ +E K R+E LL+ PK++ H ET+S ++ +D+L L
Sbjct: 33 RRMLEGLKNRLEALLS--PKIVAAFNNHCLDETKSYVKIFTAIDRLDQL 79
>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 29.1 bits (62), Expect = 3.9
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = -1
Query: 494 RLTLSLYPRATISSKANSKLKAWFKTSVSVSCTQYSGTTLLKSLNVSRSS 345
+LTL+L + S +N KL++ K SVS+S S + K L V SS
Sbjct: 605 KLTLNLEKTKCMLSGSNRKLESKIKLSVSISNYNVSNVSNFKYLGVFISS 654
>SB_54600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 611 CXVRDWRRPNVASRRAHRCPSAVALVARRCPRRLHL 718
C + D+R V +R RCP V R R++HL
Sbjct: 4 CSIPDFRTAAVVARFRPRCPIVVVTRDPRVARQMHL 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,051,573
Number of Sequences: 59808
Number of extensions: 479360
Number of successful extensions: 3044
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3041
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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