Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F08
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.3  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.3  
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy...    26   3.1  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    26   4.1  
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c...    25   7.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   9.5  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   9.5  

>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 216 VYVDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLK 341
           V+  PK   +KGI++R  S     V VT+  VG T   L LK
Sbjct: 49  VFTSPKTDAVKGIVSRSSSNV-VRVNVTA-KVGRTTHVLKLK 88


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 269 IPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNF 412
           +P+   S R+     GYQ        KRGG   PNT ++ + LNN +F
Sbjct: 177 VPSSMPSRREAGMAYGYQ------NYKRGGYT-PNTQYFEEPLNNTSF 217


>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 26/87 (29%), Positives = 38/87 (43%)
 Frame = +3

Query: 114 AKDFVDGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRVIKGIIARDLSRTKAEVT 293
           AK   D  K     ++ E+   K  PL + D    Y++    +I+     DL + KAEV 
Sbjct: 4   AKKIDDDEKQLVKPVNKEQTYKKPIPLEEDD----YIEGLSYIIQQQYFPDLPKLKAEVV 59

Query: 294 VTSGGVGATNVTLHLKSERGEGLNYLI 374
           + S  VG+ +        R E L YLI
Sbjct: 60  LESEEVGSFDAQ---NESRDEKLKYLI 83


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 199 FINGYPLTTTFSVEINKLFT 140
           F+NGY LT TF  ++NK F+
Sbjct: 247 FLNGYALTPTFR-DVNKKFS 265


>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 222 VDPKLRVIKGIIARDLSRTKAEVTVTSGGVGATNVTLHLKSERGEGLNYLILIFGQ 389
           ++PK  V+    A  L + +  V      V  T + LHL     +   +L ++FGQ
Sbjct: 50  IEPKPNVVG--TAERLPKVRCVVRARIPTVKGTEIFLHLYKNDFDNKEHLAIVFGQ 103


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +3

Query: 255 IARDLSRTKAEVTVTSGGVGATNVT---LHLKSE 347
           I RDLSRT   + + + G G   V    LHL S+
Sbjct: 365 IDRDLSRTGTSIIIVTPGTGLYEVNEKMLHLTSK 398


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 21/76 (27%), Positives = 33/76 (43%)
 Frame = +2

Query: 251 YHRQRFIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNNFNFIHLDNY 430
           YH       E RS +DK  C   + +S LK++    T LP+  +     N+  F  ++  
Sbjct: 487 YHGPDVPWQELRSTKDKDYCLSLETNSRLKQQLSSIT-LPSVEYGKLTFNDTTFNFMER- 544

Query: 431 RPAMYR*NVIVLMLIF 478
           RP  +  N    +L F
Sbjct: 545 RPRNFDVNKKYPVLFF 560


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/46 (28%), Positives = 16/46 (34%)
 Frame = +2

Query: 266 FIPNESRSHRDKWRCRGYQCDSSLKKRKRGGTELPNTHFWSKFLNN 403
           F PNE+    D W           +K  RG   LP    W   L +
Sbjct: 351 FCPNEAPGLADVWGDEFVALYEKYEKENRGRRSLPAQKVWYAILQS 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,311
Number of Sequences: 5004
Number of extensions: 35715
Number of successful extensions: 74
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)