Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_F_F08
         (540 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              27   7.4  
SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)                27   9.8  

>SB_42713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 180 KGYPLIKRDKDYVYVD-PKLRVIKGIIARDLSRTKAEVTVTSG 305
           K   ++K+DK+YV  D P+L    G+++ DL   K ++    G
Sbjct: 64  KSQTIVKKDKEYVTSDAPQLGQKTGVLSHDLDAYKKQIRELQG 106


>SB_18156| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 704

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 122 LCGRNKSE*FVDLHRKSCCQRISVNKKGQR 211
           +CGR+     +++H + C +R   NKK QR
Sbjct: 212 ICGRDFGPHSINVHERQCAKRWEANKKQQR 241


>SB_54033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 52

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 129 DGTKVNNLLISTEKVVVKGYPLIKRDKDYVYVDPKLRV 242
           D  + NN  I++   + K Y L+K + +  ++D K+ +
Sbjct: 15  DNNRSNNNTINSNSFMKKAYTLVKEESEMAHIDSKVHI 52


>SB_53163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 180 KGYPLIKRDKDYVYVD-PKLRVIKGIIARDLSRTKAEV 290
           K   ++K+DK+YV  D P+L    G+++ DL   K ++
Sbjct: 15  KSQTIVKKDKEYVTSDVPQLGQKTGVLSHDLDAYKEQI 52


>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 248 GYHRQRFIPNESRSHRDKWRCRGYQCDSS 334
           GYH  RF+P    +++   RC+G   + S
Sbjct: 742 GYHHLRFVPYSKGTYKVDVRCKGKSVEGS 770


>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 186 YPLIKRDKDYVYVDPKLRVIKGIIARDLSRT 278
           YPL   +++  +VD   R+IK II R + RT
Sbjct: 386 YPLETSEREKEFVDVHGRIIKTIITRSVIRT 416


>SB_1165| Best HMM Match : Pkinase (HMM E-Value=5.6e-23)
          Length = 560

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 193 NGYPLTTTFSVEINKLFTFVPSTKSLASMFNT*TTDRSTKT 71
           NG P T ++S E++KLF F PS  +L   F+     +S ++
Sbjct: 286 NGMPDTKSWSYELDKLF-FGPSHAALPETFDDNEVQKSLES 325


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,403,790
Number of Sequences: 59808
Number of extensions: 259809
Number of successful extensions: 567
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)